G142913


Basic Information

Item Value
gene id G142913
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40845962 ~ 40847760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU164128
ATTGTCATCGTTATGTCATTTAttgattcattttttttattttttatagaaCACATTGAGTGTACATAAAACACCATTTCAATTTCCATAAATATTTCATATTAGGGAGGAAATATGTTTCACCTTTGTGCCTGGATAGAAAATGAGTAAGAGTTACAATCATGTTGTAGCAGAGAGACAATAGCGAATAAGGCACAATACGTCAATCTGTTACATAGAGCCATGCTATCATATGGTCCACATGTATTCGTGAAGCCACTTAATGGTATTGTAAAGCTAAATCATATATCTCATTAGTGTTCTCTGCATGCTGAAGAAAGACATTGCACTAGACGACGTAGAAAACGATGGCGGATCTGTCATCCTTTATAAGAAGAGACCCCGTGGCTCAGTAAGGGCTGTCTGTCCTATCATACTAAGCATGTGAATCTAGATCCTATAACATTTGGTCGTGACGGAAGAGAAAGCCGTGCTGCTACTATGGTAAAGTAGATTACATACTGACTGAAGCCTACTGAGCCACTGTCTCTAACAGTAAAGAAAGAAGAAGCTCGAACAATAAGTAGGTAAGAAATCCTTTGATATGAGGAAACCAATTATTGCCAAGCTGAAGGCTGAAGGCCCAACCCTTCTCCAGCTGTATTATACAGGCAAGGGGAATAAAGATGAAGTCTTAGATTGTCCTTATCATCCTATGGTATGTACATGCCAACCCAGTTGTTCTCCTTCGATATGTGTAGGAGGCTCTCTCCTGATGGTCTAAGCAGTtctgaatattttttatttattttttaaagggaagagggagaggtaggCCAGAGCGGAAGGATAGAAGAGGCACTAGGTGTCAAGACAGACGCTAGCAACGAGGTGGTACACATCGGATCTTCAGAAAAAGGAAGACgctgaaaaaaacaaaacaacgaGGAGCTAAACGGCGAAACTGCATAATAGATTTAAGGCATACACAAAGTACATTTCAAATACATGTTTATACAAAGAATATCATACACAACATTCGGTATAAATGGACAAGgacataataaaaaataaaaaactgatacACAAAACTAACCTATACACGTCCCATTCTTATTTCCCAGCTATTTTTAGTTTCCCTGTAAACAAATGATTGACGTGATCGAAGTGACACTGCATTCTAGTCAGTGAGTGATGTTGTAAGGCACCGCCTGGGTTGCTGTGGTTTGCCAGGACGCTCTGACCAACATATGACACACCCATTGGCTTGTCCGTATATTAGAGTCCAACACACATAATGAAGAGGCAATCAGTAAAGAAACACGTAATTCAGTCTTACTGAGCTGTTTGGTCCATGGAAGAGCAAGAGTTGTCATTTAAGGCAAGTGTAGTAATTGTCACAGTCCCTCCCATTATATCAAAGGCCGTCTCACATTATATTATAACATTCGTTCATATGGAGCTTTGCAGTTTCCTGTCAATGACCACCAGTCGACCAATCGTTCTGCAGCGTCACGAGGGGCAAGCGAATCAGGCATCTGGGAAATGTAGCAATGAGGAAGTGGTAATGTGAAAGCTCTCTGTTAAGGGGTTCCTCATGTGGATATAGGAGCTTTGGTTTGTGGTTCCTTTGCCTCTGTGCCTTTTTGTATCTGCAGAGAGTTTATGTACTGAGATGCACTGAGATGCTGGACAGGTCGTTTCGGATGATCTCATTGACTGTGGAGACAAAAGGAGAGATATTGTTACTCGAAAACCCATCCAAAATATACCTCTCATTATaacatcatcattgtcacattaTTCATCTTCGTCAtctt
>TU164130
ATTTCCATAAATATTTCATATTAGGGAGGAAATATGTTTCACCTTTGTGCCTGGATAGAAAATGAGTAAGAGTTACAATCATGTTGTAGCAGAGAGACAATAGCGAATAAGGCACAATACGTCAATCTGTTACATAGAGCCATGCTATCATATGGTCCACATGTATTCGTGAAGCCACTTAATGGTATTGTAAAGCTAAATCATATATCTCATTAGTGTTCTCTGCATGCTGAAGAAAGACATTGCACTAGACGACGTAGAAAACGATGGCGGATCTGTCATCCTTTATAAGAAGAGACCCCGTGGCTCAGTAAGGGCTGTCTGTCCTATCATACTAAGCATGTGAATCTAGATCCTATAACATTTGGTCGTGACGGAAGAGAAAGCCGTGCTGCTACTATGGTAAAGTAGATTACATACTGACTGAAGCCTACTGAGCCACTGTCTCTAACAGTAAAGAAAGAAGAAGCTCGAACAATAAGTAGGTAAGAAATCCTTTGATATGAGGAAACCAATTATTGCCAAGCTGAAGGCTGAAGGCCCAACCCTTCTCCAGCTGTATTATACAGGCAAGGGGAATAAAGATGAAGTCTTAGATTGTCCTTATCATCCTATGGTATGTACATGCCAACCCAGTTGTTCTCCTTCGATATGTGTAGGAGGCTCTCTCCTGATGGTCTAAGCAGTtctgaatattttttatttattttttaaagggaagagggagaggtaggCCAGAGCGGAAGGATAGAAGAGGCACTAGGTGTCAAGACAGACGCTAGCAACGAGGTGGTACACATCGGATCTTCAGAAAAAGGAAGACgctgaaaaaaacaaaacaacgaGGAGCTAAACGGCGAAACTGCATAATAGATTTAAGGCATACACAAAGTACATTTCAAATACATGTTTATACAAAGAATATCATACACAACATTCGGTATAAATGGACAAGgacataataaaaaataaaaaactgatacACAAAACTAACCTATACACGTCCCATTCTTATTTCCCAGCTATTTTTAGTTTCCCTGTAAACAAATGATTGACGTGATCGAAGTGACACTGCATTCTAGTCAGTGAGTGATGTTGTAAGGCACCGCCTGGGTTGCTGTGGTTTGCCAGGACGCTCTGACCAACATATGACACACCCATTGGCTTGTCCGTATATTAGAGTCCAACACACATAATGAAGAGGCAATCAGTAAAGAAACACGTAATTCAGTCTTACTGAGCTGTTTGGTCCATGGAAGAGCAAGAGTTGTCATTTAAGGCAAGTGTAGTAATTGTCACAGTCCCTCCCATTATATCAAAGGCCGTCTCACATTATATTATAACATTCGTTCATATGGAGCTTTGCAGTTTCCTGTCAATGACCACCAGTCGACCAATCGTTCTGCAGCGTCACGAGGGGCAAGCGAATCAGGCATCTGGGAAATGTAGCAATGAGGAAGTGGTAATGTGAAAGCTCTCTGTTAAGGGGTTCCTCATGTGGATATAGGAGCTTTGGTTTGTGGTTCCTTTGCCTCTGTGCCTTTTTGTATCTGCAGAGAGTTTATGTACTGAGATGCACTGAGATGCTGGACAGGTCGTTTCGGATGATCTCATTGACTGTGGAGACAAAAGGAGAGATATTGTTACTCGAAAACCCATCCAAAATATACCTCTCATTATaacatcatcattgtcacattaTTCATCTTCGTCAtctt
>TU164126
TAAGAGTTACAATCATGTTGTAGCAGAGAGACAATAGCGAATAAGGCACAATACGTCAATCTGTTACATAGAGCCATGCTATCATATGGTCCACATGTATTCGTGAAGCCACTTAATGGTATTGTAAAGCTAAATCATATATCTCATTAGTGTTCTCTGCATGCTGAAGAAAGACATTGCACTAGACGACGTAGAAAACGATGGCGGATCTGTCATCCTTTATAAGAAGAGACCCCGTGGCTCAGTAAGGGCTGTCTGTCCTATCATACTAAGCATGTGAATCTAGATCCTATAACATTTGGTCGTGACGGAAGAGAAAGCCGTGCTGCTACTATGGTAAAGTAGATTACATACTGACTGAAGCCTACTGAGCCACTGTCTCTAACAGTAAAGAAAGAAGAAGCTCGAACAATAAGTAGGTAAGAAATCCTTTGATATGAGGAAACCAATTATTGCCAAGCTGAAGGCTGAAGGCCCAACCCTTCTCCAGCTGTATTATACAGGCAAGGGGAATAAAGATGAAGTCTTAGATTGTCCTTATCATCCTATGGTATGTACATGCCAACCCAGTTGTTCTCCTTCGATATGTGTAGGAGGCTCTCTCCTGATGGTCTAAGCAGTtctgaatattttttatttattttttaaagggaagagggagaggtaggCCAGAGCGGAAGGATAGAAGAGGCACTAGGTGTCAAGACAGACGCTAGCAACGAGGTGGTACACATCGGATCTTCAGAAAAAGGAAGACgctgaaaaaaacaaaacaacgaGGAGCTAAACGGCGAAACTGCATAATAGATTTAAGGCATACACAAAGTACATTTCAAATACATGTTTATACAAAGAATATCATACACAACATTCGGTATAAATGGACAAGgacataataaaaaataaaaaactgatacACAAAACTAACCTATACACGTCCCATTCTTATTTCCCAGCTATTTTTAGTTTCCCTGTAAACAAATGATTGACGTGATCGAAGTGACACTGCATTCTAGTCAGTGAGTGATGTTGTAAGGCACCGCCTGGGTTGCTGTGGTTTGCCAGGACGCTCTGACCAACATATGACACACCCATTGGCTTGTCCGTATATTAGAGTCCAACACACATAATGAAGAGGCAATCAGTAAAGAAACACGTAATTCAGTCTTACTGAGCTGTTTGGTCCATGGAAGAGCAAGAGTTGTCATTTAAGGCAAGTGTAGTAATTGTCACAGTCCCTCCCATTATATCAAAGGCCGTCTCACATTATATTATAACATTCGTTCATATGGAGCTTTGCAGTTTCCTGTCAATGACCACCAGTCGACCAATCGTTCTGCAGCGTCACGAGGGGCAAGCGAATCAGGCATCTGGGAAATGTAGCAATGAGGAAGTGGTAATGTGAAAGCTCTCTGTTAAGGGGTTCCTCATGTGGATATAGGAGCTTTGGTTTGTGGTTCCTTTGCCTCTGTGCCTTTTTGTATCTGCAGAGAGTTTATGTACTGAGATGCACTGAGATGCTGG
>TU164127
ATTGTCATCGTTATGTCATTTAttgattcattttttttattttttatagaaCACATTGAGTGTACATAAAACACCATTTCAATTTCCATAAATATTTCATATTAGGGAGGAAATATGTTTCACCTTTGTGCCTGGATAGAAAATGAGTAAGAGTTACAATCATGTTGTAGCAGAGAGACAATAGCGAATAAGGCACAATACGTCAATCTGTTACATAGAGCCATGCTATCATATGGTCCACATGTATTCGTGAAGCCACTTAATGGTATTGTAAAGCTAAATCATATATCTCATTAGTGTTCTCTGCATGCTGAAGAAAGACATTGCACTAGACGACGTAGAAAACGATGGCGGATCTGTCATCCTTTATAAGAAGAGACCCCGTGGCTCAGTAAGGGCTGTCTGTCCTATCATACTAAGCATGTGAATCTAGATCCTATAACATTTGGTCGTGACGGAAGAGAAAGCCGTGCTGCTACTATGGTAAAGTAGATTACATACTGACTGAAGCCTACTGAGCCACTGTCTCTAACAGTAAAGAAAGAAGAAGCTCGAACAATAAGTAGGTAAGAAATCCTTTGATATGAGGAAACCAATTATTGCCAAGCTGAAGGCTGAAGGCCCAACCCTTCTCCAGCTGTATTATACAGGCAAGGGGAATAAAGATGAAGTCTTAGATTGTCCTTATCATCCTATGGTATGTACATGCCAACCCAGTTGTTCTCCTTCGATATGTGTAGGAGGCTCTCTCCTGATGGTCTAAGCAGTtctgaatattttttatttattttttaaagggaagagggagaggtaggCCAGAGCGGAAGGATAGAAGAGGCACTAGGTGTCAAGACAGACGCTAGCAACGAGGTGGTACACATCGGATCTTCAGAAAAAGGAAGACgctgaaaaaaacaaaacaacgaGGAGCTAAACGGCGAAACTGCATAATAGATTTAAGGCATACACAAAGTACATTTCAAATACATGTTTATACAAAGAATATCATACACAACATTCGGTATAAATGGACAAGgacataataaaaaataaaaaactgatacACAAAACTAACCTATACACGTCCCATTCTTATTTCCCAGCTATTTTTAGTTTCCCTGTAAACAAATGATTGACGTGATCGAAGTGACACTGCATTCTAGTCAGTGAGTGATGTTGTAAGGCACCGCCTGGGTTGCTGTGGTTTGCCAGGACGCTCTGACCAACATATGACACACCCATTGGCTTGTCCGTATATTAGAGTCCAACACACATAATGAAGAGGCAATCAGTAAAGAAACACGTAATTCAGTCTTACTGAGCTGTTTGGTCCATGGAAGAGCAAGAGTTGTCATTTAAGGCAAGTGTAGTAATTGTCACAGTCCCTCCCATTATATCAAAGGCCGTCTCACATTATATTATAACATTCGTTCATATGGAGCTTTGCAGTTTCCTGTCAATGACCACCAGTCGACCAATCGTTCTGCAGCGTCACGAGGGGCAAGCGAATCAGGCATCTGGGAAATGTAGCAATGAGGAAGTGGTAATGTGAAAGCTCTCTGTTAAGGGGTTCCTCATGTGGATATAGGAGCTTTGGTTTGTGGTTCCTTTGCCTCTGTGCCTTTTTGTATCTGCAGAGAGTTTATGTACTGAGATGCACTGAGATGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164128 False 1799 lncRNA 0.43 1 40845962 40847760
TU164130 False 1718 lncRNA 0.41 1 40845962 40847679
TU164126 False 1524 lncRNA 0.42 1 40846090 40847613
TU164127 True 1671 lncRNA 0.40 1 40846090 40847760

Neighbor

gene id symbol gene type direction distance location
LOC110489653 LOC106605072 coding downstream 547629 40224622 ~ 40298333 (-)
LOC110489634 LOC106605073 coding downstream 766963 40003770 ~ 40078999 (-)
LOC110489623 zadh2 coding downstream 1024117 39814123 ~ 39821845 (-)
nr0b2a LOC106605079 coding downstream 1290529 39553803 ~ 39555433 (-)
LOC118940039 NA coding downstream 1344474 39499737 ~ 39501488 (-)
LOC110489712 LOC106605066 coding upstream 6455 40854215 ~ 40861194 (-)
LOC110489774 LOC106583729 coding upstream 20129 40867889 ~ 40907134 (-)
LOC110489723 NA coding upstream 80456 40928216 ~ 41111980 (-)
LOC110489798 LOC106583742 coding upstream 309248 41157008 ~ 41237519 (-)
LOC110489806 if36 coding upstream 392132 41239892 ~ 41285762 (-)
G142912 NA non-coding downstream 218 40845540 ~ 40845744 (-)
G142909 NA non-coding downstream 4140 40841600 ~ 40841822 (-)
G142907 NA non-coding downstream 7264 40838399 ~ 40838698 (-)
G142903 NA non-coding downstream 13903 40831828 ~ 40832059 (-)
G142902 NA non-coding downstream 15223 40830515 ~ 40830739 (-)
G142942 NA non-coding upstream 73766 40921526 ~ 40921746 (-)
G142944 NA non-coding upstream 105287 40953047 ~ 40953318 (-)
G142948 NA non-coding upstream 115506 40963266 ~ 41022443 (-)
G142992 LOC107712493 non-coding upstream 187817 41035577 ~ 41036199 (-)
G143030 NA non-coding upstream 243024 41090784 ~ 41091054 (-)
G141363 LOC106605077 other downstream 1080489 39763933 ~ 39765473 (-)
G140879 NA other downstream 1781544 39063862 ~ 39064418 (-)
G140479 NA other downstream 2017767 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 2797296 38046700 ~ 38048666 (-)
G142918 NA other upstream 15454 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 866786 41714269 ~ 41730507 (-)
G145010 NA other upstream 1859058 42706818 ~ 42707279 (-)
G145767 NA other upstream 2422957 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 2525080 43372725 ~ 43392160 (-)

Expression


Co-expression Network