G142846


Basic Information

Item Value
gene id G142846
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41089447 ~ 41089865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU164058
GTGCAGAGCTACTAATATCACacacagtctccctctcccccacacgTCCTCAGTCACACACACGGACTATATCCTGTCCTAACTGGCAGTAGCAGCAGTCACTCCTCTATGTGAGTGTGTGGGCCCTGGCTGGCATGTACCTTTGTACTTCTCCCTGACGTTCTCGTACGCCTGGATGAAGTCCTGCTCCTCTGCATTGGGGGGCAGGCATGCGGGTTCATACATGGCCATGGCTGTCAATGGGGACCGTCACCCTCGTCTCCTCTTTTTATtgtcctcctcctttcccttcttCTTCTTTTGAGGTCagtggctccctctctctctttccctgttgaAAACCTCtgctgtcggtctgtctgtctgtcctctctgtagtTCTCGCAGTTGTGTATGAGCTCTCCACAGCGCTCAACTTC

Function

NR:

description
Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164058 True 419 lncRNA 0.53 1 41089447 41089865

Neighbor

gene id symbol gene type direction distance location
LOC110489783 LOC106605064 coding upstream 204307 40881174 ~ 40885140 (+)
LOC110489695 LOC106605067 coding upstream 241688 40781026 ~ 40847759 (+)
LOC110489685 LOC106605069 coding upstream 436065 40636099 ~ 40653382 (+)
galr1a LOC106605071 coding upstream 770184 40309178 ~ 40319263 (+)
LOC110489640 LOC106583530 coding upstream 864115 40115958 ~ 40292372 (+)
LOC110489815 LOC106605058 coding downstream 204816 41294681 ~ 41355200 (+)
LOC110489825 LOC106605056 coding downstream 364394 41454259 ~ 41460908 (+)
LOC110489834 eny2 coding downstream 449375 41539240 ~ 41541654 (+)
LOC110489853 sybu coding downstream 604572 41694437 ~ 41710790 (+)
LOC110489869 LOC106605052 coding downstream 640820 41730685 ~ 41741910 (+)
G142845 NA non-coding upstream 548 41088700 ~ 41088899 (+)
G142844 NA non-coding upstream 4128 41085103 ~ 41085319 (+)
G142809 NA non-coding upstream 53126 41035855 ~ 41036321 (+)
G142754 NA non-coding upstream 127533 40961695 ~ 40961914 (+)
G142753 NA non-coding upstream 128763 40960479 ~ 40960684 (+)
G142850 NA non-coding downstream 4945 41094810 ~ 41095065 (+)
G142858 NA non-coding downstream 15930 41105795 ~ 41106093 (+)
G142863 NA non-coding downstream 20270 41110135 ~ 41110359 (+)
G142864 NA non-coding downstream 21841 41111706 ~ 41112083 (+)
G143045 NA non-coding downstream 25398 41115263 ~ 41115532 (+)
G139179 NA other upstream 3037703 38051359 ~ 38051744 (+)
G139101 NA other upstream 3145435 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3148733 37919735 ~ 37940714 (+)
G139004 NA other upstream 3265437 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 4687476 36354883 ~ 36405310 (+)
G143938 LOC106605049 other downstream 878509 41968374 ~ 41969317 (+)
G144661 NA other downstream 1420465 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 2641007 43730872 ~ 43731218 (+)
G146091 NA other downstream 2678842 43768707 ~ 43769162 (+)

Expression


Co-expression Network