G143840



Basic Information


Item Value
gene id G143840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41792713 ~ 41838218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU165110
cttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaaagtttgaaatatccaataaatgtcattccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaat

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU165110 True 327 lncRNA 0.42 2 41792713 41838218

Neighbor


gene id symbol gene type direction distance location
LOC110489869 LOC106605052 coding upstream 50803 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 81923 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 251059 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 331805 41454259 ~ 41460908 (+)
LOC110489815 LOC106605058 coding upstream 437513 41294681 ~ 41355200 (+)
LOC110489902 LOC106605050 coding downstream 199282 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 228786 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 262072 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 312112 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 413719 42251937 ~ 42383957 (+)
G143779 NA non-coding upstream 48925 41743519 ~ 41743788 (+)
G143778 NA non-coding upstream 50164 41742373 ~ 41742549 (+)
G143739 NA non-coding upstream 122406 41669792 ~ 41670307 (+)
G143237 NA non-coding upstream 395076 41397300 ~ 41397637 (+)
G143236 NA non-coding upstream 397606 41394853 ~ 41395107 (+)
G143860 LOC107662719 non-coding downstream 5757 41843975 ~ 41844344 (+)
G143940 NA non-coding downstream 133707 41971925 ~ 41972187 (+)
G143950 NA non-coding downstream 156724 41994942 ~ 41996046 (+)
G143953 LOC106605044 non-coding downstream 164233 42002451 ~ 42003243 (+)
G143977 NA non-coding downstream 234597 42072815 ~ 42073988 (+)
G139179 NA other upstream 3740969 38051359 ~ 38051744 (+)
G139101 NA other upstream 3848701 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3851999 37919735 ~ 37940714 (+)
G139004 NA other upstream 3968703 37777061 ~ 37824010 (+)
G143938 LOC106605049 other downstream 130156 41968374 ~ 41969317 (+)
G144661 NA other downstream 672112 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1892654 43730872 ~ 43731218 (+)
G146091 NA other downstream 1930489 43768707 ~ 43769162 (+)
G146114 NA other downstream 1961186 43799404 ~ 43799853 (+)

Expression



Co-expression Network