G143860 (LOC107662719)


Basic Information

Item Value
gene id G143860
gene name LOC107662719
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41843975 ~ 41844344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU165132
ccatacaacacagaaaggcttatagctttcctagaacagatctatgctcagctagtgccagcagaacagggggagccagtaagaaacccccaagtatttgtcatagtttgcgataacgttgcttttcaccactctgcagctgtcacagattggtttgcagcacatcacagatttatggttttgtacctgcctgcatattcacccttcctcaacccaatagaggagtttttctctgcctggaggtggaaagtgtttggtcaccacccacatgaccaaatgtctcttttggaaaccatgcgtgccggatgtgaggacacgagtcctgtaggactgccagggatggataagacactccagaaggttcttcccc

Function

NR:

description
PREDICTED: insertion element IS630 uncharacterized 39 kDa protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165132 True 370 lncRNA 0.34 1 41843975 41844344

Neighbor

gene id symbol gene type direction distance location
LOC110489877 LOC106605051 coding upstream 17142 41750039 ~ 41826833 (+)
LOC110489869 LOC106605052 coding upstream 102065 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 133185 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 302321 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 383067 41454259 ~ 41460908 (+)
LOC110489902 LOC106605050 coding downstream 193156 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 222660 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 255946 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 305986 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 407593 42251937 ~ 42383957 (+)
G143840 NA non-coding upstream 5757 41792713 ~ 41838218 (+)
G143779 NA non-coding upstream 100187 41743519 ~ 41743788 (+)
G143778 NA non-coding upstream 101426 41742373 ~ 41742549 (+)
G143739 NA non-coding upstream 173668 41669792 ~ 41670307 (+)
G143237 NA non-coding upstream 446338 41397300 ~ 41397637 (+)
G143940 NA non-coding downstream 127581 41971925 ~ 41972187 (+)
G143950 NA non-coding downstream 150598 41994942 ~ 41996046 (+)
G143953 LOC106605044 non-coding downstream 158107 42002451 ~ 42003243 (+)
G143977 NA non-coding downstream 228471 42072815 ~ 42073988 (+)
G144012 NA non-coding downstream 239277 42083621 ~ 42084114 (+)
G139179 NA other upstream 3792231 38051359 ~ 38051744 (+)
G139101 NA other upstream 3899963 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 3903261 37919735 ~ 37940714 (+)
G139004 NA other upstream 4019965 37777061 ~ 37824010 (+)
G143938 LOC106605049 other downstream 124030 41968374 ~ 41969317 (+)
G144661 NA other downstream 665986 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1886528 43730872 ~ 43731218 (+)
G146091 NA other downstream 1924363 43768707 ~ 43769162 (+)
G146114 NA other downstream 1955060 43799404 ~ 43799853 (+)

Expression


Co-expression Network