G143938 (LOC106605049)


Basic Information

Item Value
gene id G143938
gene name LOC106605049
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41968374 ~ 41969317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU165213
CTTTAAAGTCAATGGTGATATTTTCTGCTTATTCACCCCGTCAGGTAAGAAGTCCAGGAGACAGTCTAAAACGATATCCTTTACAATCTGAAAATCACTTTCCCCTTTCATATCAGCGCAAAATATTAGGTCAAGGTCCTTGTAGCCCAGTCCGCTATCCTCATGAAGAACGTGGCTTGCAGCAGACCCGTTTAACCGCACGTCCCGGACGTGGATATTCCTCTCCTCCATTCGACTACGCACCACCTTCACTATTTGTCGGGGTTTCATCTCCAAAGTGGGGAAGTTTCCACGGCCGTGGATGGGAATGGTCTCTGTCAGGATAGCATCAAGGCGCTGCACTTGTTCCCAGCCGAGAACGCTGATATTGCTGTTTTCAACCTCAGTTATAGGACTAGCACCAGTGCAACTATGTTCTTCAGACATTGTGGAGAAAATTAAACGGCAATTGACTATGAAGTTTCTTTAGAGACAGGTCCTTATCCAAATGTGGATTTTACGCGCAGTGACAGTAGGCTATAGAAGAGCAATGTCAACTTCATCCACATCGGTATCTTTAGTCAGAGTGCAGTACCTCTATATTATACTgtaacataaataaaatcaaggCGAAATAGGCTACTCAGTGCGCAGTAAAGAAATGACCAGCTGCTAACTCCAGTTGACTCGCGTATCTTTCGTCGTGAGATGAGGGAGGACAGTAAATAAGATCTTCTCTCAAAGATAGTCGTCACTTCTGCCTTGTCCTTTCTTTATAGAGCGTGAAACGTTTCCTCGTCGGTTGTCACTCAGTGCATCCGAGCTGTGCGCATCACCGTCTTTGGAGCTTGTTGGTATACTAGGAGTTCTGAGTTCGGGCTGTGACTCCATCGCCAAAGGCACGCCtatgatttttttatttgcatGAATACGCACTTGGCAAGTTCTGCAGTGATCAGCCCTCT
>TU165214
CTTTAAAGTCAATGGTGATATTTTCTGCTTATTCACCCCGTCAGGTAAGAAGTCCAGGAGACAGTCTAAAACGATATCCTTTACAATCTGAAAATCACTTTCCCCTTTCATATCAGCGCAAAATATTAGGTCAAGGTCCTTGTAGCCCAGTCCGCTATCCTCATGAAGAACGTGGCTTGCAGCAGACCCGTTTAACCGCACGTCCCGGACGTGGATATTCCTCTCCTCCATTCGACTACGCACCACCTTCACTATTTGTCGGGGTTTCATCTCCAAAGTGGGGAAGTTTCCACGGCCGTGGATGGGAATGGTCTCTGTCAGGATAGCATCAAGGCGCTGCACTTGTTCCCAGCCGAGAACGCTGATATTGCTGTTTTCAACCTCAGTTATAGGACTAGCACCAGTGCAACTATGTTCTTCAGACATTGTGGAGAAAATTAAACGGCAATTGACTATGAAGTTTCTTTAGAGACAGGTCCTTATCCAAATGTGGATTTTACGCGCAGTGACAGTAGGCTATAGAAGAGCAATGTCAACTTCATCCACATCGGTATCTTTAGTCAGAGTGCAGTACCTCTATATTATACTgtaacataaataaaatcaaggCGAAATAGGCTACTCAGTGCGCAGTAAAGAAATGACCAGCTGCTAACTCCAGTTGACTCGCGTATCTTTCGTCGTGAGATGAGGGAGGACAGTAAATAAGATCTTCTCTCAAAGATAGTCGTCACTTCTGCCTTGTCCTTTCTTTATAGAGCGTGAAACGTTTCCTCGTCGGTTGTCACTCAGTGCATCCGAGCTGTGCGCATCACCGTCTTTGGAGCTTGTTGGTATACTAGGAGTTCT

Function

NR:

description
protein FAM46A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165213 False 944 TUCP 0.39 1 41968374 41969317
TU165214 True 849 TUCP 0.45 1 41968374 41969222

Neighbor

gene id symbol gene type direction distance location
LOC110489877 LOC106605051 coding upstream 141541 41750039 ~ 41826833 (+)
LOC110489869 LOC106605052 coding upstream 226464 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 257584 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 426720 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 507466 41454259 ~ 41460908 (+)
LOC110489902 LOC106605050 coding downstream 68183 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 97687 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 130973 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 181013 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 282620 42251937 ~ 42383957 (+)
G143860 LOC107662719 non-coding upstream 124030 41843975 ~ 41844344 (+)
G143840 NA non-coding upstream 130156 41792713 ~ 41838218 (+)
G143779 NA non-coding upstream 224586 41743519 ~ 41743788 (+)
G143778 NA non-coding upstream 225825 41742373 ~ 41742549 (+)
G143739 NA non-coding upstream 298067 41669792 ~ 41670307 (+)
G143940 NA non-coding downstream 2608 41971925 ~ 41972187 (+)
G143950 NA non-coding downstream 25625 41994942 ~ 41996046 (+)
G143953 LOC106605044 non-coding downstream 33134 42002451 ~ 42003243 (+)
G143977 NA non-coding downstream 103498 42072815 ~ 42073988 (+)
G144012 NA non-coding downstream 114304 42083621 ~ 42084114 (+)
G139179 NA other upstream 3916630 38051359 ~ 38051744 (+)
G139101 NA other upstream 4024362 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 4027660 37919735 ~ 37940714 (+)
G139004 NA other upstream 4144364 37777061 ~ 37824010 (+)
G144661 NA other downstream 541013 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1761555 43730872 ~ 43731218 (+)
G146091 NA other downstream 1799390 43768707 ~ 43769162 (+)
G146114 NA other downstream 1830087 43799404 ~ 43799853 (+)
G146165 NA other downstream 1917279 43886596 ~ 43889609 (+)

Expression


Co-expression Network