G143953 (LOC106605044)


Basic Information

Item Value
gene id G143953
gene name LOC106605044
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42002451 ~ 42003243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU165230
ACACAAATGCAAGTCTATATTGTGTGTTTATATAATGGACACCTCTATGTGTGTTGGTGACAATTAACATAAAATATGACAGACTGCatatgtgtgcgtgtctgtctgtgcgtgCATAGTCTTACCCGGCGAGTCTCTCTGGCTCACTGGGGGGCTCAGCCGTACATTTGAAGGTAACCCTCCGAGCAGCAGAGACCGGAGGCCCCTGAGCTACTGGCCTTCCCAGAGCCCCTGGCCCCCCGTTCCTGACCcgactctcctcctccaccaggaGGTCCCGGAACGCTCGAGACGAAGGTGGTGTCTGGAACGGAGTGGCCCATGTTTTCGCACTCTTCGAGGGAGTAATCACTGGTGTCGATTTGGATATGGTGCACTCAGCACTGCCCTCCTTGGTTGCCATGGCGATCATCTTCCTCTGCTTCTGGGAGAGTTTGGCTGGGAGAGGGGACTGCTTGCTGCTGCTGCCAACACTGCCAGGACTTTTGGGAGTGGCTCCGAGACTTTGTGTCTTTGAGCTGGCTTCCATATCCATGATTGCCCTGAGGTCCAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165230 True 554 lncRNA 0.50 2 42002451 42003243

Neighbor

gene id symbol gene type direction distance location
LOC110489877 LOC106605051 coding upstream 175618 41750039 ~ 41826833 (+)
LOC110489869 LOC106605052 coding upstream 260541 41730685 ~ 41741910 (+)
LOC110489853 sybu coding upstream 291661 41694437 ~ 41710790 (+)
LOC110489834 eny2 coding upstream 460797 41539240 ~ 41541654 (+)
LOC110489825 LOC106605056 coding upstream 541543 41454259 ~ 41460908 (+)
LOC110489902 LOC106605050 coding downstream 34257 42037500 ~ 42039843 (+)
LOC110489918 NA coding downstream 63761 42067004 ~ 42092073 (+)
LOC110489908 LOC106605043 coding downstream 97047 42100290 ~ 42141745 (+)
LOC110489919 LOC106605045 coding downstream 147087 42139048 ~ 42220203 (+)
LOC110489963 LOC106583951 coding downstream 248694 42251937 ~ 42383957 (+)
G143950 NA non-coding upstream 6405 41994942 ~ 41996046 (+)
G143940 NA non-coding upstream 30264 41971925 ~ 41972187 (+)
G143860 LOC107662719 non-coding upstream 158107 41843975 ~ 41844344 (+)
G143840 NA non-coding upstream 164233 41792713 ~ 41838218 (+)
G143779 NA non-coding upstream 258663 41743519 ~ 41743788 (+)
G143977 NA non-coding downstream 69572 42072815 ~ 42073988 (+)
G144012 NA non-coding downstream 80378 42083621 ~ 42084114 (+)
G144016 NA non-coding downstream 86047 42089290 ~ 42089530 (+)
G144017 NA non-coding downstream 87369 42090612 ~ 42090915 (+)
G144034 NA non-coding downstream 135517 42138760 ~ 42139014 (+)
G143938 LOC106605049 other upstream 33134 41968374 ~ 41969317 (+)
G139179 NA other upstream 3950707 38051359 ~ 38051744 (+)
G139101 NA other upstream 4058439 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 4061737 37919735 ~ 37940714 (+)
G144661 NA other downstream 507087 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 1727629 43730872 ~ 43731218 (+)
G146091 NA other downstream 1765464 43768707 ~ 43769162 (+)
G146114 NA other downstream 1796161 43799404 ~ 43799853 (+)
G146165 NA other downstream 1883353 43886596 ~ 43889609 (+)

Expression


Co-expression Network