G144731


Basic Information

Item Value
gene id G144731
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42642203 ~ 42643938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU166104
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgagtgagagagagagagagagaccggaaaGATGATAGTGGGTTGTAATATGACTACATTACCAGGTATGATATAAGCCTTAGTGCACAGAAGTTATGAAAAGAGGGGTTGAATGTGAATTGTGAATGCAGATAGATTTTTGCTTTCTTTACTCAGTAACTCACAACTTATTTGAAAACAGTGCCAGCACTTTGTTTTTATTTGTGATTAACTTAAGTTTGCGATGTTTTATCGTTTGTATCTTTATTGCTCTCACGGAGAGATTTTTGTTGCAAAACTAATGCACCTAGGACGCTGGAGATTGTTGTGATAAGATGGTGAGGCCAAATGAATGGAATGAGACATGTACATAAATGACACAGGTCACTGGATGTCTGTGTGGTAGCTAGGCATTCAAGTTGAACTATTGATAGGTGTATCAGGATGACCTTGAGAGAAGATCATGTTTATTCGCAAAGTTGCAATGTCAAAGTAAATAGTTGTTTGCAAAGGCACATGGACAATAGACCAAATAAAAGAGTAAATTGTCAATCTGCTAGGATTATACTCACCCTACCTCCCAATGATGAAACATAAAATTGAAAAACAATGGGGACCAAGACACGGATCTGTCTAAACTTTTTCTCAACTGTCCTTTAAGTGTCTTTTAATTATACTTTTTGTGTCTGTAATTGAGCAAATATCTTTGAGGGTGTTTGATTGAATTGCATTGTCTTATTGTTGAAATTGTTTTATATTAGAAGTATGGGCAGACCAGACCTGCAATGAGAGAACAGCAGAGGAGGCGGCATCATATGgggcagagctgcctccagaacacgATTCATCCCCCAAAAACGTCAACCTGCGTTATATTATGGGATGCGTTTTTACCATGCTACATATGGATAACTCATTATATCAGTGCGACTACTTTGTCAAGCTATATTAGAACAGTGTATGTCCTGTTAGTGGAAACATTACATTACAGGGAAATGTACATAAGTGTGATAAACTCATGAATTCACTGTAACATACTGACAAACTACCTATGGATGTTCAATTATGATAACCCAAAGGTGAGGTGGCTGTATGACTGATTACTCTCAATGATTTGATTAAACAATAGCTGTGACATTTAAA
>TU166105
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgagtgagtgagtgagtgagtgagagagagagagaccggaaaGATGATAGTGGGTTGTAATATGACTACATTACCAGGTATGATATAAGCCTTAGTGCACAGAAGTTATGAAAAGAGGGGTTGAATGTGAATTGTGAATGCAGATAGATTTTTGCTTTCTTTACTCAGTAACTCACAACTTATTTGAAAACAGTGCCAGCACTTTGTTTTTATTTGTGATTAACTTAAGTTTGCGATGTTTTATCGTTTGTATCTTTATTGCTCTCACGGAGAGATTTTTGTTGCAAAACTAATGCACCTAGGACGCTGGAGATTGTTGTGATAAGATGGTGAGGCCAAATGAATGGAATGAGACATGTACATAAATGACACAGGTCACTGGATGTCTGTGTGGTAGCTAGGCATTCAAGTTGAACTATTGATAGGTGTATCAGGATGACCTTGAGAGAAGATCATGTTTATTCGCAAAGTTGCAATGTCAAAGTAAATAGTTGTTTGCAAAGGCACATGGACAATAGACCAAATAAAAGAGTAAATTGTCAATCTGCTAGGATTATACTCACCCTACCTCCCAATGATGAAACATAAAATTGAAAAACAATGGGGACCAAGACACGGATCTGTCTAAACTTTTTCTCAACTGTCCTTTAAGTGTCTTTTAATTATACTTTTTGTGTCTGTAATTGAGCAAATATCTTTGAGGGTGTTTGATTGAATTGCATTGTCTTATTGTTGAAATTGTTTTATATTAGAAGTATGGGCAGACCAGACCTGCAATGAGAGAACAGCAGAGGAGGCGGCATCATATGgggcagagctgcctccagaacacgATTCATCCCCCAAAAACGTCAACCTGCGTTATATTATGGGATGCGTTTTTACCATGCTACATATGGATAACTCATTATATCAGTGCGACTACTTTGTCAAGCTATATTAGAACAGTGTATGTCCTGTTAGTGGAAACATTACATTACAGGGAAATGTACATAAGTGTGATAAACTCATGAATTCACTGTAACATACTGACAAACTACCTATGGATGTTCAATTATGATAACCCAAAGGTGAGGTGGCTGTATGACTGATTACTCTCAATGATTTGATTAAACAATAGCTGTGACATTTAAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU166104 False 1190 lncRNA 0.38 2 42642203 42643938
TU166105 True 1202 lncRNA 0.55 2 42642203 42643938

Neighbor

gene id symbol gene type direction distance location
LOC110490022 LOC106605035 coding upstream 43 42617702 ~ 42642160 (+)
LOC110490015 LOC106605038 coding upstream 25715 42593932 ~ 42616488 (+)
LOC110489996 pnisr coding upstream 49651 42582359 ~ 42592552 (+)
LOC110489991 LOC106605026 coding upstream 69530 42529081 ~ 42572673 (+)
LOC110489963 LOC106583951 coding upstream 258246 42251937 ~ 42383957 (+)
LOC110490029 LOC106605030 coding downstream 20486 42664424 ~ 42683349 (+)
LOC110533774 NA coding downstream 232286 42876224 ~ 42877363 (+)
LOC110501569 mms22l coding downstream 234275 42878213 ~ 42910743 (+)
LOC110490056 LOC106605039 coding downstream 327077 42971015 ~ 42975154 (+)
LOC110490064 LOC106605040 coding downstream 331462 42975400 ~ 42978004 (+)
G144751 NA non-coding upstream 35101 42565552 ~ 42607102 (+)
G144706 NA non-coding upstream 155771 42483841 ~ 42486432 (+)
G144634 NA non-coding upstream 237082 42404877 ~ 42405121 (+)
G144629 NA non-coding upstream 239959 42401898 ~ 42402244 (+)
G144176 NA non-coding upstream 256531 42385198 ~ 42385672 (+)
G144812 NA non-coding downstream 87992 42731930 ~ 42732135 (+)
G145043 NA non-coding downstream 117043 42760981 ~ 42761299 (+)
G145044 NA non-coding downstream 118263 42762201 ~ 42762510 (+)
G145045 NA non-coding downstream 122168 42766106 ~ 42766418 (+)
G145191 NA non-coding downstream 251494 42895432 ~ 42895766 (+)
G144661 NA other upstream 76173 42510330 ~ 42566030 (+)
G143938 LOC106605049 other upstream 672886 41968374 ~ 41969317 (+)
LOC110489834 eny2 other upstream 1100612 41539240 ~ 41541654 (+)
G139179 NA other upstream 4590459 38051359 ~ 38051744 (+)
G139101 NA other upstream 4698191 37943742 ~ 37944012 (+)
G146054 LOC100136012 other downstream 1086934 43730872 ~ 43731218 (+)
G146091 NA other downstream 1124769 43768707 ~ 43769162 (+)
G146114 NA other downstream 1155466 43799404 ~ 43799853 (+)
G146165 NA other downstream 1242658 43886596 ~ 43889609 (+)
G146226 NA other downstream 1352842 43996780 ~ 43997065 (+)

Expression


Co-expression Network