G145769


Basic Information

Item Value
gene id G145769
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43353226 ~ 43359910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU167291
tcGAAGTAATAATGTTTAttacaacaggggcaggcaaacgacaggtcaaggcaggcaggggtctataatccagagagggtgtaagaCACAGGAACagcaggcgggctcagggtcaggtcaggcagaggtcggtaatccagagtagtggggcaaaggtacaagacgacaggcaggctcagggacagggcaggcagagaggtcaacaccgggaaaactaggaaacaggaacaaaatgagagacaggagcagagggaaaaccgctggtaggcctgacgaaacaaaacgaactggccacagacaaacagagaacacagatataaatagacgggataatggggaagatgggtgacacctggaggagggtggagacaagcacaaagagaCTGATCAGGGAGTGAAAAAAAAATCTttggctctctctcgctctctctctctctcctcttgaatCTCTTTCTGGAACGGCTGAAATGCAGTAGACCCCTTGTTGAGTCAGGATGCCTGAGAATTATGGGCAGCTCAGCTACTTCATTTCTATTCCCAGCATGCCCCAGGGGCTCTGAGGGAAACATCCAGTGGGAAGAACAATACAAAGCAGGGTGCATTACGGCAAAGTGACCTCATCCCACAGTAAAGCATATTGTGATATATGGAGCATGGTAAGATTAGGGGTAGGCCACTGTGGGGGGTTAGGGTGACGTGACCGGTTTCTTTCTTAACTGGTGTCTCTttgctgctctctgtctgtggcttagttCCCCTAGAACATCAACACATCTGATGTATTTATGATCATGAGAAGTATGAGGCTGGGCCCTGAACAGTGTTGCTGTAAAAAATGTTTGAACATTAATGGCTACCTGTGTATTCCCACTGGAACTGTTGTTTAAATACATGTGGGATGAGAGGTGTTTAGGGGGTTAGCGTGGCGGGGAGGTGGGCGTCTTGTATCTGTTCATGTGAACACACTCATCTTATGTCAAGCTCTCTGCTGGAGTTGTTTATACATTTGACCCAGTTCTATTTTTTTGTGTGGGCAATTTTACACGATGCGTTTGCAATTTCACACGCACAGACAGATAAAGTCGCAGACAAAGAGGAATATGCAAATGTGCAATTTACCAAATAGAAATATGAAAGTAAACACATGGATGTATGTagatcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtattcctACACATGCATTTGTGTCCACCTGTTTtcaagtgtgtgtatatgtgtgtgtacatgtacatGCATGCTTGTGTCTGCGTGTGCATATAAATGGGAGTAGGTGTACATTCCAATGGGAGCCCAGACTTGTTTGCTGCATTCCAGACTCCTGCTTCAGGAAACAATCTCCTTTGAGAATCCCTTGGGGATTTCCACCGAAAAGAGTCTCTTTCTGTTGGGACAGGACACAACGTAGCGAGTGAATGGAAAAAgtgtagtataaatactgtagtatggGGAAAAAAActgtagtatctatatactatagtaattactgtagtgtttttgcagactgtagtatattgtagtatttactgtagtgtttattatctttgacatagcaGTGAGAACTTTGTCCTTGAGGAGACCTACTGGGTAAAATATTCAAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167291 True 1640 lncRNA 0.45 2 43353226 43359910

Neighbor

gene id symbol gene type direction distance location
LOC110490160 LOC106605017 coding downstream 88981 43261166 ~ 43264245 (-)
rrp15 LOC106605018 coding downstream 116408 43227942 ~ 43236818 (-)
LOC110490140 LOC106605021 coding downstream 128021 43197588 ~ 43225313 (-)
LOC110490133 lyplal1 coding downstream 222081 43125698 ~ 43131145 (-)
LOC110490105 LOC106605024 coding downstream 264337 43056952 ~ 43088889 (-)
LOC110490183 LOC106605015 coding upstream 12815 43372725 ~ 43392160 (-)
LOC110490218 NA coding upstream 244299 43604209 ~ 43608220 (-)
LOC110490284 rcc1 coding upstream 318245 43678155 ~ 43685499 (-)
LOC110490292 LOC106605010 coding upstream 339049 43698959 ~ 43760350 (-)
LOC110490298 LOC106605170 coding upstream 416616 43776063 ~ 43783884 (-)
G145766 NA non-coding downstream 77942 43274719 ~ 43275284 (-)
G145688 NA non-coding downstream 167847 43135485 ~ 43185379 (-)
G145682 NA non-coding downstream 228580 43124311 ~ 43124646 (-)
G145863 NA non-coding upstream 50457 43410367 ~ 43410694 (-)
G145877 NA non-coding upstream 69290 43429200 ~ 43429496 (-)
G145882 NA non-coding upstream 73571 43433481 ~ 43433697 (-)
G145888 NA non-coding upstream 79279 43439189 ~ 43439405 (-)
G145893 NA non-coding upstream 81867 43441777 ~ 43442509 (-)
G145767 NA other downstream 80710 43270717 ~ 43272516 (-)
G145010 NA other downstream 645947 42706818 ~ 42707279 (-)
LOC110489860 LOC106605053 other downstream 1622804 41714269 ~ 41730507 (-)
G142918 NA other downstream 2489505 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 3111822 40224622 ~ 40298333 (-)
LOC110490352 NA other upstream 1074880 44434790 ~ 44464449 (-)
LOC110490449 scmh1 other upstream 1212038 44571948 ~ 44606865 (-)
G147800 NA other upstream 1503175 44863085 ~ 44863559 (-)

Expression


Co-expression Network