G147224 (LOC106604983)


Basic Information

Item Value
gene id G147224
gene name LOC106604983
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44466235 ~ 44467438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU168870
gaagaagagttgtatggcattgaagctcgtctagatgttagttaacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcgtacaGGTGGATCAGTGAATCACCAGCAACAATGaccgacatcattgatgtatgcagagaaaagagtcggcccgagaattgaaccctgtggcaccccatcaACCAGTATTAGCCTGTACTTTTACTCACCCAGGTGTAGCTGGACGTCCTTCACTTCTAAGGTGTTGGATTTGCGATGGCGGGCCAGCTGACAGGCAGCCGTCACCACACTGTCAATGAAGTCATCTGCAATCTGTAGCAGCATCTCCTCCACATCCTCATCGAGCTGCTCATTGGGGTCAATCTCTCTTACGAGGTCCTGCAGCTTCTTTTTACTCAACACCTGACTTCCTTCTGGGCTGATTCTGCCGGCAGGGCCAGGTGTGCCCATCACCTTCCCTGGAACGGCGGCGGTGTTGCAATTGGCCATGCTGGTGGCGAGAGGTAGTGTTGAGGAGGCCTCGGCTTTCACGGTGAAGAAGTTGGAGTGGTTGGACAGTGGGTGGCACTGGGTCATAATCTGCCAGACGGTGGGGCCTCTCTCTGGGTCTGCACTGTCGTCGTAAGGACCGTG

Function

NR:

description
transcription initiation factor TFIID subunit 12-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168870 True 644 lncRNA 0.44 3 44466235 44467438

Neighbor

gene id symbol gene type direction distance location
LOC110490352 NA coding downstream 1786 44434790 ~ 44464449 (-)
LOC110490335 ptpru coding downstream 43350 44084560 ~ 44422885 (-)
LOC118940359 NA coding downstream 537954 43924190 ~ 43928281 (-)
LOC118940358 LOC106584332 coding downstream 542498 43922960 ~ 43923737 (-)
LOC110490306 LOC106584341 coding downstream 588433 43809668 ~ 43877802 (-)
LOC110490449 scmh1 coding upstream 106004 44571948 ~ 44606865 (-)
LOC118940389 NA coding upstream 262654 44730092 ~ 44737978 (-)
LOC110501618 LOC106573044 coding upstream 289960 44757398 ~ 45073140 (-)
LOC110501628 LOC106588271 coding upstream 656275 45123713 ~ 45124844 (-)
LOC110490531 LOC106560723 coding upstream 667038 45134476 ~ 45168260 (-)
G147091 NA non-coding downstream 249751 44215687 ~ 44216484 (-)
G147080 NA non-coding downstream 262733 44198593 ~ 44203502 (-)
G147081 NA non-coding downstream 264535 44198895 ~ 44201700 (-)
G146959 NA non-coding downstream 328955 44043733 ~ 44137280 (-)
G146534 NA non-coding downstream 456428 44009601 ~ 44009807 (-)
G147266 NA non-coding upstream 13159 44480597 ~ 44480954 (-)
G147267 NA non-coding upstream 15020 44482458 ~ 44482711 (-)
G147291 NA non-coding upstream 50524 44517962 ~ 44518789 (-)
G147352 NA non-coding upstream 142135 44609573 ~ 44623234 (-)
LOC110490298 LOC106605170 other downstream 682516 43776063 ~ 43783884 (-)
LOC110490183 LOC106605015 other downstream 1074106 43372725 ~ 43392160 (-)
G145767 NA other downstream 1193719 43270717 ~ 43272516 (-)
G145010 NA other downstream 1758956 42706818 ~ 42707279 (-)
G147800 NA other upstream 395647 44863085 ~ 44863559 (-)
tmem86a tmem86a other upstream 2376742 46844180 ~ 46921608 (-)
G150290 NA other upstream 2378714 46846152 ~ 46849616 (-)

Expression


Co-expression Network