G147543


Basic Information

Item Value
gene id G147543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44920418 ~ 44926833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU169244
ctacctgtacattgtaacggttttgacttgaggttattttttataggggtgccaggtaggttgtgcctaccagagaaaacattggtttctccttttagtttgggagggaatgagtcccatctggtccgtcaagtctacaccattacaaaggacttatgtaaacgtcagaagggaaatcaacttttcataaacccttaaaacattgaaaagaacttcaaaaacaactattcttttgcgtgggttgtattagcaacatcaatggattacacacacataataatat

Function

NR:

description
PREDICTED: sorting nexin-6 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169244 True 283 lncRNA 0.37 2 44920418 44926833

Neighbor

gene id symbol gene type direction distance location
LOC110490437 LOC106584212 coding upstream 366439 44551163 ~ 44553979 (+)
LOC110490388 LOC106604983 coding upstream 447494 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 959426 43955049 ~ 43960992 (+)
LOC110490316 LOC106584327 coding upstream 970071 43947088 ~ 43950347 (+)
LOC110490231 LOC106605011 coding upstream 1268666 43630465 ~ 43651752 (+)
LOC110490546 LOC106560730 coding downstream 276476 45203309 ~ 45255843 (+)
tsg101a tsg101 coding downstream 517240 45444073 ~ 45468845 (+)
brsk2a LOC106560719 coding downstream 669170 45596003 ~ 46132114 (+)
LOC118940395 NA coding downstream 772364 45699197 ~ 45755983 (+)
spty2d1 spty2d1 coding downstream 2039303 46966136 ~ 46980755 (+)
G147506 NA non-coding upstream 54833 44865186 ~ 44865585 (+)
G147505 NA non-coding upstream 55806 44864220 ~ 44864612 (+)
G147394 NA non-coding upstream 181945 44731784 ~ 44738473 (+)
G147369 NA non-coding upstream 244454 44673006 ~ 44675964 (+)
G147368 NA non-coding upstream 247860 44672298 ~ 44672558 (+)
G147654 NA non-coding downstream 146013 45072846 ~ 45143168 (+)
G148016 NA non-coding downstream 248013 45174846 ~ 45175067 (+)
G148018 NA non-coding downstream 250366 45177199 ~ 45177497 (+)
G148029 NA non-coding downstream 262324 45189157 ~ 45189363 (+)
G148030 NA non-coding downstream 262940 45189773 ~ 45190090 (+)
G147510 NA other upstream 48918 44870800 ~ 44871500 (+)
G146841 NA other upstream 491025 44429153 ~ 44429393 (+)
G146226 NA other upstream 923353 43996780 ~ 43997065 (+)
G146165 NA other upstream 1030809 43886596 ~ 43889609 (+)
G146114 NA other upstream 1120565 43799404 ~ 43799853 (+)
G148191 NA other downstream 545249 45472082 ~ 45492379 (+)
uevld uevld other downstream 2054886 46981686 ~ 47007672 (+)
G150997 NA other downstream 2571115 47497948 ~ 47547579 (+)
G152167 NA other downstream 3629949 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 5171583 50098387 ~ 50100624 (+)

Expression


Co-expression Network