G148127


Basic Information

Item Value
gene id G148127
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45278652 ~ 45279223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU169881
tcatttgaaggggtgttcacaaACCTTTGGTGATGTAGTGTATATCAAGTGACCTTAACAAATGGCAGAGAACATTAATGAGAGGGTATTTCCTTGTTGACATACATAAACTGACTCAAAAATTGTAGATGTTGGGAAGCCCTGTCATGTACCCCACCAGTAGGTCTGTGTCACTGTAATGACCAATGTCTCTGTGATGCGGACATATAGACCATTTTCTAAGTAAATTTGTCCACTGACTCAATTACCTATAGCAATTACTCATAGTTCAATACATTGGCTGTACGTTCACTTTAGCTGTAGAGTTAAATCTCAGACCACTACCCACACGTTGACCAGTGCCACTAATAATAGATTCTGACCATTTAAGTTTTTGTTGATCTGTCCTCTTGAAATTAAGTGAAGTCATAGTGAATTGGTTGAACTGGGTGTATGATTGtacgtagctagctaataacTAGTTCCAAGTCTACATTATGTCACGTGAGAAAGCCGGAAATTGAGGTTCAAGACTAACTAACTCTTGTGGCAGAGCTCACAACATTCCAGAAAGAACTCCAGACACTCGGTGG

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169881 True 572 lncRNA 0.45 1 45278652 45279223

Neighbor

gene id symbol gene type direction distance location
LOC110490546 LOC106560730 coding upstream 22809 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 724673 44551163 ~ 44553979 (+)
LOC110490388 LOC106604983 coding upstream 805728 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 1317660 43955049 ~ 43960992 (+)
LOC110490316 LOC106584327 coding upstream 1328305 43947088 ~ 43950347 (+)
tsg101a tsg101 coding downstream 164850 45444073 ~ 45468845 (+)
brsk2a LOC106560719 coding downstream 316780 45596003 ~ 46132114 (+)
LOC118940395 NA coding downstream 419974 45699197 ~ 45755983 (+)
spty2d1 spty2d1 coding downstream 1686913 46966136 ~ 46980755 (+)
uevld uevld coding downstream 1702463 46981686 ~ 47007672 (+)
G148030 NA non-coding upstream 88562 45189773 ~ 45190090 (+)
G148029 NA non-coding upstream 89289 45189157 ~ 45189363 (+)
G148018 NA non-coding upstream 101155 45177199 ~ 45177497 (+)
G148016 NA non-coding upstream 103585 45174846 ~ 45175067 (+)
G147654 NA non-coding upstream 135484 45072846 ~ 45143168 (+)
G148129 NA non-coding downstream 3179 45282402 ~ 45282662 (+)
G148134 NA non-coding downstream 10690 45289913 ~ 45290152 (+)
G148252 NA non-coding downstream 231716 45510939 ~ 45512458 (+)
G148254 NA non-coding downstream 235523 45514746 ~ 45519843 (+)
G148415 NA non-coding downstream 260407 45539630 ~ 45539986 (+)
G147510 NA other upstream 407152 44870800 ~ 44871500 (+)
G146841 NA other upstream 849259 44429153 ~ 44429393 (+)
G146226 NA other upstream 1281587 43996780 ~ 43997065 (+)
G146165 NA other upstream 1389043 43886596 ~ 43889609 (+)
G146114 NA other upstream 1478799 43799404 ~ 43799853 (+)
G148191 NA other downstream 192859 45472082 ~ 45492379 (+)
G150997 NA other downstream 2218725 47497948 ~ 47547579 (+)
G152167 NA other downstream 3277559 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 4819193 50098387 ~ 50100624 (+)

Expression


Co-expression Network