G148254


Basic Information

Item Value
gene id G148254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45514746 ~ 45519843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU170017
gcacctagtcttgcgactctgggacatttctaaatgtcgtcattttcgtgatgcaaaaatgaattgaagttatttcaaatgtacgaggctgtttctcggtccgagaaccttctagagccacgtaactcaccacgcaccatctacgggaggtctagaacaggtttctaaagtttcggaactctaggtccgaccgttcttttttagctccaacaaagctaactattgcagccactgtctgtctctacgcaccccaatacgtccctccatccaagttgtgttttagtgcaatttttttttcctttgattttttttgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggaaagatcagacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagctataaatcaccacatgtcttgattgacatggccacttacagaatcctgagttttaagtctttacgttaagaattgactgatctacacagggttgaatgcactatgtctatcaaactgcatgcattgtatgggtaaacacttttaggggcattttaaccacttccggttggtccaggaagcttagaatcaacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccacataggcctcaggttgaaattaggggtgcaggcaatgtattcctatggggagagatgacactgtaatctgtgagatcaaaaaacactgttttactgttaagggttaatgccacacgggcaaggttaggcttgttgagatcgggaggaccttaggaacattcatgtggtggaatttttcttctcaccctaacggttctctcactgtcactcaaaagcaaatgacattgtggggcaggcttcattttgggcctactattctaatggtcggttattgtgttatttcataaaatcatagaaaatcacagaaatgtcgcagagctccgcagcacactttaaaaagattcgtatgaacaccctgcaactggatctgtaaccgttgaaaaaaaaaaacgcctatttgtgaccatcaccaatttgtcattgttccgtttctcttaaatgacgatagataaatggctggttctttttttattgacaccggaggctccttggctttgacccgaagtggaaaaataatttctctacttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170017 True 1235 lncRNA 0.42 3 45514746 45519843

Neighbor

gene id symbol gene type direction distance location
tsg101a tsg101 coding upstream 45901 45444073 ~ 45468845 (+)
LOC110490546 LOC106560730 coding upstream 258903 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 960767 44551163 ~ 44553979 (+)
LOC110490388 LOC106604983 coding upstream 1041822 44464974 ~ 44472924 (+)
LOC110490326 LOC106605007 coding upstream 1553754 43955049 ~ 43960992 (+)
brsk2a LOC106560719 coding downstream 76160 45596003 ~ 46132114 (+)
LOC118940395 NA coding downstream 179354 45699197 ~ 45755983 (+)
spty2d1 spty2d1 coding downstream 1446293 46966136 ~ 46980755 (+)
uevld uevld coding downstream 1461843 46981686 ~ 47007672 (+)
cpt1ab LOC100653436 coding downstream 1614372 47134215 ~ 47205441 (+)
G148252 NA non-coding upstream 2288 45510939 ~ 45512458 (+)
G148134 NA non-coding upstream 224594 45289913 ~ 45290152 (+)
G148129 NA non-coding upstream 232084 45282402 ~ 45282662 (+)
G148127 NA non-coding upstream 235523 45278652 ~ 45279223 (+)
G148030 NA non-coding upstream 324656 45189773 ~ 45190090 (+)
G148415 NA non-coding downstream 19787 45539630 ~ 45539986 (+)
G148584 NA non-coding downstream 230387 45750230 ~ 45801517 (+)
G148621 NA non-coding downstream 280078 45799921 ~ 45800947 (+)
G148959 LOC100136012 non-coding downstream 782539 46302382 ~ 46302597 (+)
G148967 NA non-coding downstream 798207 46318050 ~ 46321610 (+)
G148191 NA other upstream 22367 45472082 ~ 45492379 (+)
G147510 NA other upstream 643246 44870800 ~ 44871500 (+)
G146841 NA other upstream 1085353 44429153 ~ 44429393 (+)
G146226 NA other upstream 1517681 43996780 ~ 43997065 (+)
G146165 NA other upstream 1625137 43886596 ~ 43889609 (+)
G150997 NA other downstream 1978105 47497948 ~ 47547579 (+)
G152167 NA other downstream 3036939 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 4578573 50098387 ~ 50100624 (+)
G154859 NA other downstream 5645572 51165415 ~ 51167174 (+)

Expression


Co-expression Network