G149025


Basic Information

Item Value
gene id G149025
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46401592 ~ 46401968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU170868
gatgtaacatggtgaagccccaaaattgccctccctggaagcctgtgtttcagacataaggaagtgaattgtggcaaatgttctacttttaaactcggacaaaacagagatgcttgttctatcTAGTTCTTaaaaaacaaagagatcttctgttgaatctgacaattaatcttgatggttgtacagtcgtcgcaaataaaactgtgaaggacctcggcgttactctggaccctgatcactcttttgacgaacatatcaagactgtttcaatgacagcttttttccatctacgtaacatttaaaaaatcagaaactttctggcCAAAAATTttgaaaaattaatccatgcttttgttacttctaggttagacgtctgc

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170868 True 377 lncRNA 0.38 1 46401592 46401968

Neighbor

gene id symbol gene type direction distance location
brsk2a LOC106560719 coding upstream 269478 45596003 ~ 46132114 (+)
LOC118940395 NA coding upstream 645609 45699197 ~ 45755983 (+)
tsg101a tsg101 coding upstream 932747 45444073 ~ 45468845 (+)
LOC110490546 LOC106560730 coding upstream 1145749 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 1847613 44551163 ~ 44553979 (+)
spty2d1 spty2d1 coding downstream 564168 46966136 ~ 46980755 (+)
uevld uevld coding downstream 579718 46981686 ~ 47007672 (+)
cpt1ab LOC100653436 coding downstream 732247 47134215 ~ 47205441 (+)
igf2b igf2 coding downstream 966212 47368180 ~ 47373699 (+)
osbpl5 LOC106560704 coding downstream 1625441 48027409 ~ 48133974 (+)
G149021 NA non-coding upstream 8685 46392603 ~ 46392907 (+)
G149016 NA non-coding upstream 15393 46386000 ~ 46386199 (+)
G148968 NA non-coding upstream 63719 46322656 ~ 46337873 (+)
G148967 NA non-coding upstream 79982 46318050 ~ 46321610 (+)
G148959 LOC100136012 non-coding upstream 98995 46302382 ~ 46302597 (+)
G149027 NA non-coding downstream 1334 46403302 ~ 46403515 (+)
G149030 NA non-coding downstream 4512 46406480 ~ 46406706 (+)
G149035 NA non-coding downstream 8907 46410875 ~ 46411078 (+)
G149041 NA non-coding downstream 11903 46413871 ~ 46414142 (+)
G149046 NA non-coding downstream 18790 46420758 ~ 46421000 (+)
G148191 NA other upstream 909213 45472082 ~ 45492379 (+)
G147510 NA other upstream 1530092 44870800 ~ 44871500 (+)
G146841 NA other upstream 1972199 44429153 ~ 44429393 (+)
G146226 NA other upstream 2404527 43996780 ~ 43997065 (+)
G146165 NA other upstream 2511983 43886596 ~ 43889609 (+)
G150997 NA other downstream 1095980 47497948 ~ 47547579 (+)
G152167 NA other downstream 2154814 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 3696448 50098387 ~ 50100624 (+)
G154859 NA other downstream 4763447 51165415 ~ 51167174 (+)

Expression


Co-expression Network