XLOC_002117


Basic Information

Item Value
gene id XLOC_002117
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22960289 ~ 22965426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005891
CATCATTTCTACAGATGTTCTTTCTACCTTTTTTTTACAGGTATGAAAGTAAAGGTGTGTAAATCTCATTCAAATGTTAGTCTCTCAACAATCAATCTGCTTGTTCAGACGGAGCTTCCAAAAGCTCCCACTGTGTGGCGTCAATGAGCCTATAGTTAAGGAGTCTGTATTTCTGCGGGTCTTTCTGCCTCTGTCTGCGTACCTCCTCATACAGACTCTCAAGCACAGCCAGAGGAGGTGTGAATTGGCCCATCTTGGCCAGATCTAGGTAATAACCCCACTGATCCCTGTCCAAATTGAGCAGGTGCTTCATCTGCACAcctttgtcttgttttctttGCATCTCTCCATGTACCTCCATCTCCATCTCTTCCTGGGTGGGCAGTTTTATCAAGCCCTCCAGAACAGCAAGAGCAAATTTAACCTGTGGATAAAAACGAAATGTGCAACAGTGAGAACGAATCACACTAAGTTTTCAATCTGTATTAAGTTCTCTGCTCACCTGACAGTCAAAATGTatgaaggggcaaataattttgcaaataccaataaaaaaaatGGAAGGAAAGCTAGGGGGCAGCAGGTATTTATATAGAGGAGCCACTAAAAGGTCTTGTATGTCCAGGGCAAGCTCTGATGGAGAGAGGAAAGGGAAGTTAAAGTTGTATCCTGTACAGAAGAGAAGAATATCTGCCCGGGTCACTGATCCATCCTGGAACTGTAAAGAGCCATCCTCCAAAACACCAACAACAGCGCTGGCCTGCCGGATGCCCAAAGGTGGAGAAATGCCACATGAATGCAGAGCATAATACCTATTCACATCACCTCAGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005891 True 832 lncRNA 0.44 2 22960289 22965426

Neighbor

gene id symbol gene type direction distance location
XLOC_002116 FP102052.2 coding upstream 3919 22938231 ~ 22956370 (+)
XLOC_002115 zgc:103508 coding upstream 34250 22918338 ~ 22926039 (+)
XLOC_002114 med11 coding upstream 44193 22912251 ~ 22916096 (+)
XLOC_002113 arrb2a coding upstream 52871 22890791 ~ 22907418 (+)
XLOC_002112 ap4m1 coding upstream 98211 22854803 ~ 22862078 (+)
XLOC_002118 si:dkey-175g6.2 coding downstream 56837 23022263 ~ 23026529 (+)
XLOC_002119 NA coding downstream 68903 23034329 ~ 23039290 (+)
XLOC_002120 slc25a1a coding downstream 94965 23060391 ~ 23069323 (+)
XLOC_002121 LTN1 coding downstream 133939 23099365 ~ 23215879 (+)
XLOC_002122 CT827808.1 coding downstream 452407 23417833 ~ 23417947 (+)
XLOC_002111 AL807389.1 non-coding upstream 112885 22847272 ~ 22847404 (+)
XLOC_002110 NA non-coding upstream 121808 22834311 ~ 22838481 (+)
XLOC_002106 NA non-coding upstream 338998 22620330 ~ 22621291 (+)
XLOC_002102 NA non-coding upstream 583261 22373301 ~ 22377028 (+)
XLOC_002128 NA non-coding downstream 577191 23542617 ~ 23544066 (+)
XLOC_002131 NA non-coding downstream 623249 23588675 ~ 23591058 (+)
XLOC_002132 NA non-coding downstream 1017881 23983307 ~ 23992917 (+)

Expression


Co-expression Network