G149098


Basic Information

Item Value
gene id G149098
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46491577 ~ 46498939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU170945
GGACAgggctgggagaggagagaaagcgATGGGACAGGATGAGGAGGGAGgccggtggtagctggtcccctacaagaaGGTGAGGTACCAAAGggccctccgccccctctggacatcgaggggcccccggcgtacacagtacgagctattctggactcgagacgccgggtgaggggcctgcagtacctcgggTACTGTCACGAGTCCCGCCGAAGATTGTGCCTCTTCCTGCTCGTCGTCGCcggccatcgattccctttcctttTGTTTCTGTTAATTGGGTctaattggttacacctgttttgagttagttttgtttgtaggctatttaagggcactaggcccgctgggtattgtgcgggcttgttttctgtttatTGTTGTTGGTGTATTAGTGTGATCTCTATTTTTCCAGACAGTTTTAGTCCTGTGTGTTTTGGACAGGTTGTTTCATGCGCCCTTGTGTTTTGCACGTACGTGTATCCGCTGTCTTTGGAATAAAAGATC
>TU170946
ggagaggagaggtagagaaagcgATGGGACAGGATGAGGAGGGAGgccggtggtagctggtcccctacaagaaGGTGAGGTACCAAAGggccctccgccccctctggacatcgaggggcccccggcgtacacagtacgagctattctggactcgagacgccgggtgaggggcctgcagtacctcgggTACTGTCACGAGTCCCGCCGAAGATTGTGCCTCTTCCTGCTCGTCGTCGCcggccatcgattccctttcctttTGTTTCTGTTAATTGGGTctaattggttacacctgttttgagttagttttgtttgtaggctatttaagggcactaggcccgctgggtattgtgcgggcttgttttctgtttatTGTTGTTGGTGTATTAGTGTGATCTCTATTTTTCCAGACAGTTTTAGTCCTGTGTGTTTTGGACAGGTTGTTTCATGCGCCCTTGTGTTTTGCACGTACGTGTATCCGCTGTCTTTGGAATAAAAGATC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170945 False 507 lncRNA 0.57 3 46491577 46498939
TU170946 True 502 lncRNA 0.46 2 46491683 46498939

Neighbor

gene id symbol gene type direction distance location
brsk2a LOC106560719 coding upstream 359463 45596003 ~ 46132114 (+)
LOC118940395 NA coding upstream 735594 45699197 ~ 45755983 (+)
tsg101a tsg101 coding upstream 1022732 45444073 ~ 45468845 (+)
LOC110490546 LOC106560730 coding upstream 1235734 45203309 ~ 45255843 (+)
LOC110490437 LOC106584212 coding upstream 1937598 44551163 ~ 44553979 (+)
spty2d1 spty2d1 coding downstream 467197 46966136 ~ 46980755 (+)
uevld uevld coding downstream 482747 46981686 ~ 47007672 (+)
cpt1ab LOC100653436 coding downstream 635276 47134215 ~ 47205441 (+)
igf2b igf2 coding downstream 869241 47368180 ~ 47373699 (+)
osbpl5 LOC106560704 coding downstream 1528470 48027409 ~ 48133974 (+)
G149049 NA non-coding upstream 58210 46424221 ~ 46433367 (+)
G149046 NA non-coding upstream 70577 46420758 ~ 46421000 (+)
G149041 NA non-coding upstream 77435 46413871 ~ 46414142 (+)
G149035 NA non-coding upstream 80499 46410875 ~ 46411078 (+)
G149030 NA non-coding upstream 84871 46406480 ~ 46406706 (+)
G149144 NA non-coding downstream 56084 46555023 ~ 46555261 (+)
G149151 NA non-coding downstream 65015 46563954 ~ 46564202 (+)
G149154 NA non-coding downstream 69280 46568219 ~ 46568459 (+)
G149158 NA non-coding downstream 73413 46572352 ~ 46572611 (+)
G149167 NA non-coding downstream 83473 46582412 ~ 46634067 (+)
G148191 NA other upstream 999198 45472082 ~ 45492379 (+)
G147510 NA other upstream 1620077 44870800 ~ 44871500 (+)
G146841 NA other upstream 2062184 44429153 ~ 44429393 (+)
G146226 NA other upstream 2494512 43996780 ~ 43997065 (+)
G146165 NA other upstream 2601968 43886596 ~ 43889609 (+)
G150997 NA other downstream 999009 47497948 ~ 47547579 (+)
G152167 NA other downstream 2057843 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 3599477 50098387 ~ 50100624 (+)
G154859 NA other downstream 4666476 51165415 ~ 51167174 (+)

Expression


Co-expression Network