G150478


Basic Information

Item Value
gene id G150478
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47227385 ~ 47230109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU172408
TATTGCAGTTTGTCGATTCTATTTCTCTAATTTACAGAAgagaaaaataaaacatgtaattgCGCAGTCATTGAAATATGTACATTATTGATGTGGTTATGGTAATACCCGGTCCGTCCTCCTACTGTATAAGAGAGGGCTGACAACAAGGTACATATCATCACGCTTGCTCAGCGTGTGGTGGGAAAAGTGTCTCCAAGTTTTTCTTAGCAACTTACATCTACAGTACCATAAAACAGCATACACTGAAAAACATAAGCAGGAAAAAAGAAAAGCTCTTTACATAAACAGCTAGTTCTACTGCATTTGGCCATAACGGTTAAGTACATGAATCTCTAATAGGGTTTAAGACGTTTAAGACACATGCCCACAATGTGCTGTGGCACTAAGACATTGTGTGATTTGATTAGCTACTAACAGTAGACCTGAGTGTTCTTTCTGTATGAAGAAAACAAGTCAAATTAAAGTAAATCAATTCAGTTGTCAAAATGAAAGGTGTAATTAAATGACGCAGTTCAGGTCCCAGGATGACAAACAAAACAGAGAGAATCCGTACCGAGGTTTGATTTGTTAAGCAACGACTGGTTTTTGGTTTCTTACGAaggaaacgttttttttttttttagaaaattaCATCACCGGGAGAAATTGCTGAAAACCTTTTCTATCTTTCTGACTACAAAACTTAGAAATGCACCGTTTTCACAtacactggtatggtgctggaTATAAAGAatgaggtgaaaaatctgtctgtgaacTGAGGGTATAGTTACAGTAAATCAAATAATAAATTCACTAACCAAATCACTTAGCAGGTCTGTAATGTGTGGAGACAATTGCTCTATATTTGGACAGCCTCTATAAAAATCACATGCTTTCTAAACCAGATTGGCTGTCTATCTAACTGTATAGCAGTTAACTCTGACAACTCAGTCAAATGTTAATTCAAAATCTTTACAGTAGATCCGTCTTTCAATTGCTGTGTAGccttcaaaatatatttgagaattTTTTTCATAAAACTCTACTACTGCAGTAAATTAATCAGATGCTTTGAGAAGAGGATGTAGCTAATAATTCATAGAGATCAACTCAATATTATCTTGATAAGGGCACTGATGCCAATTAATGGATCCAATGAATGGTTCCCACCAGCCCTTTACGTTAGACAAATATGCTATCATATTACGAAAGAATAATACAGAAACATTGAATTTCTACTCTAAGTAATCAAGATGTAGCTGTGTGAACTATcactttaaagggatagttcagtgAAATTACATATTTAGAAATTCTGACTTTGAATGACTGCAATCCACAATTTGGTTTTGTTCATATTAGCATTTTGGGACCAAATAGTATCCCCATTTCAAATGTCCTGCCAAAATCATCTGAACCATTGAGCAACACAATCCATTTAAGAGATGATTTGGATTGCAGTGTGGATTGCAGTCACTCATTGTACCTAGACTGCTTTCAAGGAAACATATCTAAATATGTAATTTCCCTGAACTATCCCATGAAGGTTAGGGTtactggaaagagagagagcgcacaCATTTCTTTGAGACTGAATTGTTTGTAGAAGAAAGTTAAGTTTAACAGGCTGGAGTCTATTTCGTTTAATTTATTTGTTTGTATTTGGTGCATTTATATATTGGGTCTATTTACCGACAGCCTGTATAGGTCCGGAAAATACGTTATTGTCTATTTTATTACTCTGCCTGAAATCACTATCTCTTTAGTTCCTATGTCTCTTTCCATGGATGCTTTCCCGTTCAGGGAAAAAAGCGAGCATTTCTTGTGCTGCAGGAGCTGTATTTACTATGCTCTCTTCCGGGACAATGTGGACTGACCAGAGTTTTGAGGCAACAATTGTTTACTTGCAGAAGACTATAGGAAAGAAGTGACTACTCTTAGTAAACAGATTCAAAACTTGCACAATCTACTGGGGAAAGTACCCACGCCTACCTTTTCCACACCACAGGCTGGACTTCGTTTCAATGTGTTGAGAGTATCACCACCATCTCAACACTCCTTGACTGAATGGCCAATGCCTTCCAGGGACCCCTCCCCAAAGAAGCCTCCCACTCCCCTGGGAAATGGAGCAGGACCGTTGCCTCTGGTGGATTGAGGATAATACTCTGCTGCCCAACCATGGAAGTACGTCACCCGCCATAGGCATTTCGCATCAGGCCCTAAACTGTTTTACTTCTTTGCTCTATTGcagataagcatgctccattcaagaAACTAAGGGTAAGGGATAAAGCTAATCCCTGGTTCGCGCATGAACTATCAGAAATACTTCTGGAGAGAAATGTAGCTTGGGCTAAGGCTAGGATGACTGAATTTAAGTCTGACTGGCAGTCCTTCAGACGCTTGAGAAATATGTCTATGCCTGGTTAAAAAGGCTAAATCGACATACTTCTTGAACTGGTGAGAATCCAGCTGCCTTCTGGAAGGGAGTCAAATCTCTGAAACAAAACTCCATCCCCTCATTACTCCAGCACGTTACGACAGCCTCTGTTCCCATAACAGATAAGATGGACATTTGTGATGGACATTTTTAATAACCACTTTGCCTCTGGGGGTCACCTATTTGATTTTATAGCTTCTGAAAACTCTGATTCCACCTCGAGCCAGGTTGCAGAGAACAATACATTCCCAGATACACATTCCTCATTTCAACCATTGGATGTCTACAGTATGTACTAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC109204916

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172408 True 2725 lncRNA 0.39 1 47227385 47230109

Neighbor

gene id symbol gene type direction distance location
cpt1ab LOC100653436 coding upstream 21944 47134215 ~ 47205441 (+)
uevld uevld coding upstream 219713 46981686 ~ 47007672 (+)
spty2d1 spty2d1 coding upstream 246630 46966136 ~ 46980755 (+)
brsk2a LOC106560719 coding upstream 1095271 45596003 ~ 46132114 (+)
igf2b igf2 coding downstream 138071 47368180 ~ 47373699 (+)
osbpl5 LOC106560704 coding downstream 797300 48027409 ~ 48133974 (+)
fcsk fuk coding downstream 1164874 48394983 ~ 48447787 (+)
LOC118940424 NA coding downstream 1182598 48412707 ~ 48417058 (+)
prr5l prr5l coding downstream 1251419 48481528 ~ 48501880 (+)
G150467 NA non-coding upstream 6856 47214098 ~ 47220529 (+)
G150339 NA non-coding upstream 220673 47006339 ~ 47006712 (+)
G150324 NA non-coding upstream 273538 46953612 ~ 46953847 (+)
G150319 NA non-coding upstream 284295 46942856 ~ 46943090 (+)
G150317 NA non-coding upstream 285936 46941181 ~ 46941449 (+)
G150488 NA non-coding downstream 16537 47246646 ~ 47246955 (+)
G150564 NA non-coding downstream 117161 47347270 ~ 47347545 (+)
G150566 NA non-coding downstream 119712 47349821 ~ 47350035 (+)
G150576 NA non-coding downstream 135556 47365665 ~ 47366117 (+)
G150557 NA non-coding downstream 145379 47375488 ~ 47377174 (+)
G148191 NA other upstream 1735006 45472082 ~ 45492379 (+)
G147510 NA other upstream 2355885 44870800 ~ 44871500 (+)
G146841 NA other upstream 2797992 44429153 ~ 44429393 (+)
G146226 NA other upstream 3230320 43996780 ~ 43997065 (+)
G150997 NA other downstream 267839 47497948 ~ 47547579 (+)
G152167 NA other downstream 1326673 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 2868307 50098387 ~ 50100624 (+)
G154859 NA other downstream 3935306 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 4091687 51317121 ~ 51339537 (+)

Expression


Co-expression Network