G150488


Basic Information

Item Value
gene id G150488
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47246646 ~ 47246955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU172418
CCCCTGTGGGGCTACGGGGAGGCTGAGCCAATAGGCCTCAGTGCCGTCCAGCAGGGACTTGTGGAACTGGGTGGTGTCCACGCTCAGGAACGGGGACAGGGTGATGGAAATGTTTAGAAGCTTGATCAGTGAGAGGTCCCTGAAGTCCCTGGTCTGTCTCTTGGATGTCCCTCTTTTCCTGCTGGCGAGGTAGTCTTGGtcctgtagggagagagaaagagatattgGAGCAGAAGACTGGAAGAGAGACAATGCAGGATATGAACTGGGAACTGAAGAAGACCATGTCGGTCCAAACACTGTGATCATA

Function

NR:

description
SITS-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172418 True 310 lncRNA 0.54 1 47246646 47246955

Neighbor

gene id symbol gene type direction distance location
cpt1ab LOC100653436 coding upstream 41205 47134215 ~ 47205441 (+)
uevld uevld coding upstream 238974 46981686 ~ 47007672 (+)
spty2d1 spty2d1 coding upstream 265891 46966136 ~ 46980755 (+)
brsk2a LOC106560719 coding upstream 1114532 45596003 ~ 46132114 (+)
igf2b igf2 coding downstream 121225 47368180 ~ 47373699 (+)
osbpl5 LOC106560704 coding downstream 780454 48027409 ~ 48133974 (+)
fcsk fuk coding downstream 1148028 48394983 ~ 48447787 (+)
LOC118940424 NA coding downstream 1165752 48412707 ~ 48417058 (+)
prr5l prr5l coding downstream 1234573 48481528 ~ 48501880 (+)
G150478 NA non-coding upstream 16537 47227385 ~ 47230109 (+)
G150467 NA non-coding upstream 26117 47214098 ~ 47220529 (+)
G150339 NA non-coding upstream 239934 47006339 ~ 47006712 (+)
G150324 NA non-coding upstream 292799 46953612 ~ 46953847 (+)
G150319 NA non-coding upstream 303556 46942856 ~ 46943090 (+)
G150564 NA non-coding downstream 100315 47347270 ~ 47347545 (+)
G150566 NA non-coding downstream 102866 47349821 ~ 47350035 (+)
G150576 NA non-coding downstream 118710 47365665 ~ 47366117 (+)
G150557 NA non-coding downstream 128533 47375488 ~ 47377174 (+)
G150890 NA non-coding downstream 146308 47393263 ~ 47393541 (+)
G148191 NA other upstream 1754267 45472082 ~ 45492379 (+)
G147510 NA other upstream 2375146 44870800 ~ 44871500 (+)
G146841 NA other upstream 2817253 44429153 ~ 44429393 (+)
G146226 NA other upstream 3249581 43996780 ~ 43997065 (+)
G150997 NA other downstream 250993 47497948 ~ 47547579 (+)
G152167 NA other downstream 1309827 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 2851461 50098387 ~ 50100624 (+)
G154859 NA other downstream 3918460 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 4074841 51317121 ~ 51339537 (+)

Expression


Co-expression Network