G151438


Basic Information

Item Value
gene id G151438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47821237 ~ 47822508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU173411
GGATAACAAACGGAGAAAAACGCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATGAAAAGCAGAGAgaaaagcattgttggttaacatGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAACAAGGGTTGGATAACAAGCGGAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAgaaaagcattgttggttaacaaGCAGAGAGAAAACCAGGGTTGTATAACAAGCTTAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAAACAGGGTTGGATAACAAGCAGAGAGAAAACAGGGTTGGATAACAAGCAGAGAGAAAAGCATTGTTGGTTGACAAGCAGAGAGAAAACCAGGGTTGTATAACAAGCTTAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATGACAAGCGGAGAGAAAAACAGGGTTGGATAACAAGCGGAGAGAAAACAGGGTTGGATAACGAGGAGAGAAAAACAGGGTTGGAGAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGTGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAGCCAGGGTTGGATAACAAGTGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTG
>TU173412
GGATAACAAACGGAGAAAAACGCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATGAAAAGCAGAGAgaaaagcattgttggttaacatGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAACAAGGGTTGGATAACGAGCGGAGAGAAAACCAGGGTTGGATAACGAGCAGAGAGAAAAACAGGGTTGGATAACAAGCGTAGAGAAAAGCAGGGTTGGATAACATGCGTAGAGAAAAGCAGTGTTGGATAACAAGCGGAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAAGCATTGTTGGTTGACAAGCAGAGAGAAAACCAGGGTTGTATAACAAGCTTAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATGACAAGCGGAGAGAAAAACAGGGTTGGATAACAAGCGGAGAGAAAACAGGGTTGGATAACGAGGAGAGAAAAACAGGGTTGGAGAACAAGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGTAGAGAAAAGCAGAGTTGGAGAGCAAGTGGAGAGAAATCCAGGGTTGGATAACAAGCTTAGAGA
>TU173416
GGATAACAAACGGAGAAAAACGCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATGAAAAGCAGAGAgaaaagcattgttggttaacatGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAACAAGGGTTGGATAACGAGCGGAGAGAAAACCAGGGTTGGATAACGAGCAGAGAGAAAAACAGGGTTGGATAACAAGCGTAGAGAAAAGCAGGGTTGGATAACATGCGTAGAGAAAAGCAGTGTTGGATAACAAGCGGAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAAGCATTGTTGGTTGacaaGCAGAGAGAAAACCAGGGTTGTATAACAAGCTTAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAAACAGGGTTGGATAACAAGCAGAGAGAAAACAGGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAGCCAGGGTTGGATAACAAGTGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU173411 False 809 lncRNA 0.57 4 47821237 47822508
TU173412 False 624 lncRNA 0.41 2 47821237 47822264
TU173416 True 610 lncRNA 0.46 4 47821237 47822508

Neighbor

gene id symbol gene type direction distance location
igf2b igf2 coding upstream 447538 47368180 ~ 47373699 (+)
cpt1ab LOC100653436 coding upstream 615796 47134215 ~ 47205441 (+)
uevld uevld coding upstream 813565 46981686 ~ 47007672 (+)
spty2d1 spty2d1 coding upstream 840482 46966136 ~ 46980755 (+)
LOC118940395 NA coding upstream 2065254 45699197 ~ 45755983 (+)
osbpl5 LOC106560704 coding downstream 204901 48027409 ~ 48133974 (+)
fcsk fuk coding downstream 572475 48394983 ~ 48447787 (+)
LOC118940424 NA coding downstream 590199 48412707 ~ 48417058 (+)
prr5l prr5l coding downstream 659020 48481528 ~ 48501880 (+)
cdkn1cb LOC106560698 coding downstream 914011 48736519 ~ 48738551 (+)
G151431 NA non-coding upstream 6352 47814409 ~ 47814885 (+)
G151419 NA non-coding upstream 14513 47806522 ~ 47806724 (+)
G151416 NA non-coding upstream 17538 47803311 ~ 47803699 (+)
G151413 NA non-coding upstream 19514 47801521 ~ 47801723 (+)
G151389 NA non-coding upstream 29725 47786427 ~ 47791512 (+)
G151449 NA non-coding downstream 9203 47831711 ~ 47831940 (+)
G151459 NA non-coding downstream 19166 47841674 ~ 47842148 (+)
G151464 NA non-coding downstream 21248 47843756 ~ 47843968 (+)
G151473 NA non-coding downstream 32193 47854701 ~ 47855031 (+)
G151481 NA non-coding downstream 37782 47860290 ~ 47860946 (+)
G150997 NA other upstream 273658 47497948 ~ 47547579 (+)
G148191 NA other upstream 2328858 45472082 ~ 45492379 (+)
G147510 NA other upstream 2949737 44870800 ~ 44871500 (+)
G146841 NA other upstream 3391844 44429153 ~ 44429393 (+)
G152167 NA other downstream 734274 48556782 ~ 48557686 (+)
LOC110491026 LOC106560691 other downstream 2275908 50098387 ~ 50100624 (+)
G154859 NA other downstream 3342907 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 3499288 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 3589758 51412121 ~ 51417154 (+)

Expression


Co-expression Network