XLOC_002118 (si:dkey-175g6.2)


Basic Information

Item Value
gene id XLOC_002118
gene name si:dkey-175g6.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23022263 ~ 23026529 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004112
CGCTCCGCATTCATCTCTCAACAGTGCAAGACAGACCGAAGTGTGTTTCAAATAACTGTTTTTGGGAAAGCAAACTTACTTTAACTcaagtttttaaatgaaaaggATAGCGCTCGTTTCTAAACGTCATCCAAGAAGCACAAGGCTTTGAGTTCCAGCTAATTTGTTCGGGAAATCAGGTGCTCCCCTCTCCCCCATCCTGTCCTCTCTGCATGGTCATGTTCTGCTGTTGCTACCCCTCCAGCACCTCAGCTCTCCTGTTAGTCCTTCTCAGCCTCACCCCCCTGCCGGCCCTGGCTGCTCCTGCACTTCAGCAGAGATCTTCAGTCAGCAGCATCGATGAGGCTCTCCACATGGCAAAAGAGGACCCGGGGGCAACAGAAGGAGATACTTGGACACACAGGAAAGTGGACAGCCTGCTCCAGAAACCCCTGGGACAGGAACTTGTCTCAGATATGGACTCTGCCAGTGCTCTAGCCTCAGTTCTGCTTGAGGCTCTCGACCACCCAGTTAGAGAGAAGATGGCTAAGGGGAATTCTGAAGAAGCACTCCTGATAGAGGCGACAAGGAATCATGCAGTGATGGAGCAGGACATGGAAAAATCATCAGAGTCAGTTCATCAAGGTGAGGAAAATGGGGAACAAGAAAAGCCAAAAGATGGAAGTGAGAACAGTGTGAATACAGTTGAAGCAGTGGATGGAGAACTGCAGAGTCAGTCTGACGTAGCCTCCTCCCTCCAGCGCAAAGCCAGGGGTTATTTCCAAAATATTGACCTCGGACTGCAAGACAATGAGATCCTCCCACCTTTAAAAGGCTATAAAGCCTATAACCAGCAGCTGGCCCAGGCGACCAAGAAGCTGAAGTGGCAGGAGGAGCGAACAAAAAGCCCATCGCAGCTTGAAAGAAACTTTATGGACGATTTTGACTTtgtggaagaggaggaggaagagattCTGACCCGCAAGGAAGAAGAGGCACGGGCAAGAGCAGAGCAGGAGGAGGTAAGGCGGCAAGAGGCAGAAGCACAGGAGGCTCGTGAGGAGGAGCAGAGACTGGCAGACATCGCCTCTGACATGCTTCTGGAGTACATGGGCAGAAAGCAGAAATCCTCCTCCTACATGAGAGACATGAATGAGGTGGCTCTTCTGAACAATGTAGCAGAGGACAAACGCTCGAATGAGGTAGAggacagtgatgatgatgatgagatgGATCCCCAAACCATCGACAAGCTGATCGAGATCTCCAGCAAGCTGCACTTGCCTGCTGATGATGTGGTTGAAATAATCAGTGATGTTcaggagaagaagaaaaagaggaaggATTTACCCCAGAACAACACCCCTCGTTTCCGTCCTCTAGTTCCCCTCAAAGCCAAGCCGAGGCCTCAGGCATATCAGTATCCCAAATCACCTAAGAAATCCTCTTATACAGTCGACCCATATAAGAAATGGTATAAGGAGAAAAACAAAAGCAAGTTCAGCAAACAGGACTACTGGTTTAAGCCGCAAAAGCAGTTTCTGGCCTATCCCTCGTTCCCCTATTATCAGAAGCCATATCGAGCCTACTACCCAGTCTACTTCCCCGCTCCTAAACCTCGGTTCTATACAAATCCTGCTCTGTCATTTGATTACAACTTTGGGGGCTCCATGGGGTATGGTCTGAAGCCTCCAAACCGCAGGTACAGAGACAGGCCCAAGACGAGGGACTGGAAATGGGCGCAAGCCCCTCAGCGCTCCCAGAGCCCCTACCCACAACCTGACACTGTCATATCTAATTACATTCTCCCCCATCCCCGAACTTACCAGGCTCTCCCTATGCCAAAACCACGTTCTCCTCCAAGTGGGAGAGCTCCTTCTTACATTTATCCACCAGACTATGTGTATGATGAGCCGGAGTCTCCACAGGAGAGTGACGAAGAACTGGAGAACTTCATTGAGAAGATTTATTACAATCGTAGGTTATTTTAGACAGTTGGAGAGTTCAGGATTTTCTCAAGCGATGAATCAAGCGATGAAAGAGTGAGGAGAAAAAGCTGACAGGGGGTTTTAGTGACAGGGCTGTGAGCAGACAGTTAGGTGTTTCTTCTCCACTCTTGTGTTTTGATACATTCCAAATCAGGAACGGAAGAGAAGGTGCTGCTACATCAGAACCTCTCTGCGTGCACTCATTTTGTTTCTCTCgcagtttacattttaatttggtGAGAGAATAAACAGGTGAATTTGTAAGGTTTCATTCAGGTATGTTTTTGATTCTCTTGCATGTGaaaaaagagaaatatatatataaaagaaaactaAATGGCGAAAAGAAAACGTTTTTGGTGCCAATTGCAAGAGTCCCATGTTTATacaaagatttattttctttAGGAAACACTTGATTAATTGAAGAGCAAGGCTTGTGGTTGAATTCTTGACACTCCAGGGCACAGTAATAATTGCTATGGCGCAAGTTACACTTACAAGTAACTGTCAAATTATTACAGGCTTTTCCTGAGGGTCTGTTGGATTGTTTTGATCAATGTTCCTATTGCCTTAATACTGATCACTGTTTTAGCTCATCCATGTGCATGCAGGTCTTgcaccacttaaaaaaaaaaatgattcagtcACGCACGCTGTAAACAATGCTTGAAACTAAATCTTCCATTTTATTCACAGAAATGCAAAACGGTGGATATCTTTGCTAAGTCGGTGCCCTGTCAATCTACTTGGTGGAATACCTGTACACATGTGATTTAATGTGTTAACTTCACATCTTGCcaaaattttaaagaaatttgaAAAATGCCCCTGTAACTGTGGGTTACCTCTAATGTTTAACAACTGAGTACAGGATCTTTGTCTCGAGAGCCAATAGAACGCTGTATAGTAATGTTTGTTCTTAAAAATAAGTTTTCAAATGTCTGAAGTTTGTGAGGAAAACTCTGAGGGTGAACAGTTTGCACGTCTATCTGTAtttgcatctttaaaaaaaaaatcacaaaaaaaaatctgccaaatttgaggaaaatttccttgatcaaactgtgattatttaaaaaaaaagataaaaaaaaacaaaacaaagacaactCTAATTACTATAGCAAGTGTTTTCATCAGTGAATTGTCTTGTGAAAGGAATTTGTTGTTGTCAACTTCCAGATTGTAAGTTGTACAGTGTCAAATAAAACAAGTGTGTGTGCAATGTGTAAATAACAGCATGTTGATTACTAGTTTTGCtatatgacaaaaataaaagcaattattttattaaagtcagTTTTTTAA

Function

symbol description
si:dkey-175g6.2 Predicted to enable neuropeptide hormone activity. Orthologous to human VGF (VGF nerve growth factor inducible).

GO:

id name namespace
GO:0005184 neuropeptide hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8061 Predicted to enable neuropeptide hormone activity. Orthologous to human VGF (VGF nerve growth factor inducible).

Ensembl:

ensembl_id ENSDARG00000086665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004112 True 3278 mRNA 0.44 2 23022263 23026529

Neighbor

gene id symbol gene type direction distance location
XLOC_002117 NA coding upstream 56837 22960289 ~ 22965426 (+)
XLOC_002116 FP102052.2 coding upstream 65893 22938231 ~ 22956370 (+)
XLOC_002115 zgc:103508 coding upstream 96224 22918338 ~ 22926039 (+)
XLOC_002114 med11 coding upstream 106167 22912251 ~ 22916096 (+)
XLOC_002113 arrb2a coding upstream 114845 22890791 ~ 22907418 (+)
XLOC_002119 NA coding downstream 7800 23034329 ~ 23039290 (+)
XLOC_002120 slc25a1a coding downstream 33862 23060391 ~ 23069323 (+)
XLOC_002121 LTN1 coding downstream 72836 23099365 ~ 23215879 (+)
XLOC_002122 CT827808.1 coding downstream 391304 23417833 ~ 23417947 (+)
XLOC_002123 si:ch73-122g19.1 coding downstream 414959 23441488 ~ 23443074 (+)
XLOC_002111 AL807389.1 non-coding upstream 174859 22847272 ~ 22847404 (+)
XLOC_002110 NA non-coding upstream 183782 22834311 ~ 22838481 (+)
XLOC_002106 NA non-coding upstream 400972 22620330 ~ 22621291 (+)
XLOC_002128 NA non-coding downstream 516088 23542617 ~ 23544066 (+)
XLOC_002131 NA non-coding downstream 562146 23588675 ~ 23591058 (+)
XLOC_002132 NA non-coding downstream 956778 23983307 ~ 23992917 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_10256417_10260924 NA coding CI01000304 null 10256223 ~ 10260924 (+)