G152375


Basic Information

Item Value
gene id G152375
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48472056 ~ 48476174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU174456
ctttgagatatcaaatGTGTAAGGGCCGAGATGACCGAGACGATGATGGCTAAGCCGAGTTCGGGGTCAAGTTCATGCCCCCAGTCATGCGGTTATAGCATTTCTCACGGTTTACTCACGATTTATGTGTAGTTTATCTCGGATTGGAACAGAAGTTACCTAAGGCAACTTCCTTTTCTCGGATGCCGGTACCTCGGTTAGGACCGAGAGGCAGTAAGCGGAGAGAGACTTGGGGCTGTGGTCGGAACAGGTGAAACTAGCATCCCAACAGGGGGAGACTTCTGGTTACATATATGGCCCAAGTTCGGATGGCCCAAGTTCGGATGACGACTTGGGGTGCATTTCAAACTCAAAGTAGACAGCCTTTGGCCCTAAACCCTCAGCCCTTGAATGACGTTTCACATCGTCACATTCGATTGTACCTTAAATGTCCCTTGCCCAAGCGGGGGAGAGTGATGATCGGAGAGGAATCATCCTTAGTGGAAATCTTGAAGTTGAGCTTAAAAACAACCAACCTAAAGCTATTAATGTACCTAGGAAGCTAACGTATCTATGCAGCACTCCTctcaggtagctagctacagttacccatagctggctagctagttttaTAATTTGGTCATTTATTCCAATAAACTTCAGAATACCCAAAAATATGTTTAGAATCTAGCTACGTTTTATAGGCTCCTCATTACAAGACTAAGCCAATTTGTCCATGCTTAAACCAATGTTTAAATCTTTTTTTAGCAACCTAGCTCCATACTTTTTCCTGACATGCTGAAAATGCAGCATTGTTGTTGATTAAATTTGACACTTCGCAGCCAGCAGAGTTTGACATATGACTGCAGTTTGTATTGAATTGTGGGTCATATCAACCCCGCAAGTCAAAGTTGTTCACTCGCTCCCTCAAGCTAATTCGAGGGGGTGTCACGATCGTTAGAATaactggaccaaagcgcagcgtgatctgggttccacatcttttattTCTAAGTGAAACTCAcagcaaaacaaaaacattgaatctcaaaacgaaacgtgaagctaacaATGGCGCTAACAGGCAactggctgcctaaatatgatccccaatcagagactacGACAAACTGATTGGGAACTATACCTGGCCAATATAGAAACATAATcccctagatgacccaccctattcacaccccgacctaaccaacacagagaatataaaaactctctatggtcagggcgtgacagtacccccacccCCGCAAAACCTGAATCAATAGGGGAGGATCCGGGTAGGCATCTACTGTCgggggcggctccggtgcggggcgAACCTGATACGTTATCCTcaatggcggctctggtgcggagATCGTCGCCGGatgctccggaccgtggatcgtcgccggaggcaccacaccgtagatcgCCGCCGGGGACTCCGAACCGTAGATCGCtgccggggactccggaccgtagatcgtcgccggatgctccggactgggaaccctcacaggaggctctggactgcagaccgtcgctggaggctccggaccgcagaccgtcgctggaagctccggaccgcagaccatcgctggaggctccggaccgcagaCCGTCGAGAGGAGGTTCCATACCGTgaaacgtcgccggaagctctggactgggaactgtcgccggaagctctggactgggaactgtcgccggaagctctggactgagaactgtcgccggaagcttgGTGCGTggggccggcactggtggtaccggtcTGGTGACATGCACCTCAGGACGAGCTCGAGGAGCACatgacgtactggactgtggaggcgcactggagggcTGATcggtgggaccggtacaggtggcaccgggctggtgacacgcacctcagggcgactgcggggaggaggcacaggacgcactgggctgtgaaggcgcactggggATACAGCGCGCTAAgccggcacaacccgtcctggacAGATACCCACTTTAGCACTTTAGCATGACAAGTAcgaggagctggcacagaacGTGCACAGTGCGTATCACCGCAAAACATGGTGCCTGACCGGTCACACGCTCCCCGCGATGAGTGTGGGGAGTTTGCTCTGGTTCACTCCCCTCAACTTTCGCTGTCCACTCCTCGCTCAATCTGTCCCAATATTCTTCCTCGGTCTCTGACTCACCCCTCAGCGTCGCCGACCACTCCGTGTGCCCACTCTTTTTCGGGCTGTCTTTGGGGCTTGCGTCGTGGCCGCGAACCCCGGTGTCGTCGCTGTTGTTCCCTCGCTGCCTctgcctgcttccatggcaggcttctgtctcctgccataatctcttcccacgtccaggatgtcctcctcTCCTGGCTTTCCTCATGGGCACGGTGCTTGGTCCGttgttggtgggatcttctgtcacgatcgttagAATAACTGGACCAAAACAATAAATCTCAAAACGAAATGTGAAGCTAACCATAGTGCTAAAAGGCAACTAtccatagacaagatcccacaaagcacaaaggggaaatggctgcctaaatatgatccccaatcagagacaacgacaaacagcctggtatggttctcaatcagaggcagctgtcgatcgttgtctctgattgagaatcatacttatgtAGCCTGTTTTCTGTGTCCGAAAACACGGAACTGTTTTGTTTtaattttgtgtagtgttcaatttttattaaaaatatgatgaacacttaccacgctgcgtattggtccgatccttcttactcctcctcagaagaggaggacgaaaaccgttacagaatcacccaaccCAACTCAatccctgaccaaactaacacaaagacataataacggaactaaggtcagaacgtgacaactctGTTACTGGTGATTTCTATCCTTTGTTTAGCAAGCCTATTTCTGAATTTAATTTAGTTAACACTATCTCAAATGGTGGCTCACAATGTTTAGAATTTTTGGTTTAGGTTGATGGAGTCTAGCTAACATCAGCAAATGTGCAAATCTCTCTTCACCCACCATCTTCACCAACAACCACTCCTTACCCTCCTCCATACCATTGCATGCCTGTTTTTATCAATGATGTATagaaaccctggattgctgatacTATGTATTGGCTATTGGGAGGCTTTGAAGAACTCTGTAGTAGGAGCAGttctccataggaatgaatggaattcaacagtatttcaattaaatgttaaggacaaaattacatgtatttaattgtgtttttttgtggggacagtaacattattAATCTCTAAATATtatacttttttatttgtatGTTGAGCTCACATAATCTAATTtaaaaagtatgcattaaggtgtctgtaatagaacatgtggcaaaaacaaatgctttttaaaagtgcaatatgtaactttttgggcgacctgaccaaattcacatagaaatatgagttatagatctatcattctacttaaaagcatgtctaataagcggtagatatgttctatcaaccaatcaaatgtatttataaagccctttttacatcagcagatgtcacaaagtgttatacagaaacccagcctaaaaccccaaacaacaagcaaggCAGATGTAGAAGCccggtggttaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggaaccaggttctgaggggtggccagtcctgttctggctgtgccgggtggagattataagagtacatggccataaggccagattgttcttcaagatgttcaaacgttaatagatgaccagcagggacaaataataatcacagtggttgtagagggtgcaacaggtcagtacctcaggagtaaatgtcagttggcttttcatagccgagcaatCAGAGGTCGAGACTGCAGATGCAGTAGAGAGCGAGTCGAAAACCGCAGGTCCGGGACAAAGTAGCTTGtcaggtgaacaggtcagggttccatagccacaggcagagcagttgaaactagagcagcagcacaaccaggtggaaaTGTGGGCAGCAATgagtcatcaggccagatagttctagggctcaggtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174456 True 4065 lncRNA 0.48 2 48472056 48476174

Neighbor

gene id symbol gene type direction distance location
commd9 commd9 coding downstream 14798 48449143 ~ 48457258 (-)
nap1l4a LOC106560703 coding downstream 87244 48319220 ~ 48384812 (-)
phlda2 phla2 coding downstream 194484 48275074 ~ 48277572 (-)
mrpl23 LOC105008177 coding downstream 473599 47864812 ~ 47998457 (-)
si:ch211-236l14.4 LOC106560706 coding downstream 1160351 47227366 ~ 47311705 (-)
th th coding upstream 61656 48537830 ~ 48560832 (-)
ptdss2 ptdss2 coding upstream 185277 48661451 ~ 48697994 (-)
LOC118940428 NA coding upstream 225275 48701449 ~ 48711230 (-)
trnas-gcu NA coding upstream 334178 48810352 ~ 48810433 (-)
trnas-gcu-2 NA coding upstream 335297 48809911 ~ 48812873 (-)
G152328 NA non-coding downstream 16798 48405172 ~ 48455258 (-)
G152038 NA non-coding downstream 158527 48313296 ~ 48313529 (-)
G152026 NA non-coding downstream 166873 48304964 ~ 48305183 (-)
G152017 NA non-coding downstream 173467 48298346 ~ 48298589 (-)
G152002 NA non-coding downstream 199962 48271615 ~ 48272094 (-)
G152395 NA non-coding upstream 33942 48510116 ~ 48512784 (-)
G152399 NA non-coding upstream 41939 48518113 ~ 48518348 (-)
G152403 NA non-coding upstream 46994 48523168 ~ 48523379 (-)
G152405 NA non-coding upstream 48501 48524675 ~ 48524885 (-)
G152396 NA non-coding upstream 49135 48525309 ~ 48525737 (-)
G152024 NA other downstream 168393 48303311 ~ 48303663 (-)
G151920 NA other downstream 245112 48226299 ~ 48226944 (-)
G151875 NA other downstream 283778 48187958 ~ 48188278 (-)
G151474 NA other downstream 620708 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 1266623 47194893 ~ 47205433 (-)
G154300 NA other upstream 1625256 50101430 ~ 50107447 (-)
G154338 NA other upstream 1680512 50156686 ~ 50157825 (-)
G155003 NA other upstream 1939569 50415743 ~ 50452147 (-)
G155072 NA other upstream 2103624 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 2494902 50971076 ~ 50971935 (-)

Expression


Co-expression Network