G152235


Basic Information

Item Value
gene id G152235
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48655291 ~ 48655631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU174298
ctgtaactcagtaaaatctttgaaattgttgtttatatttttgttcagtgaagATGTTCATTTTGGTTTATGAAAATCTACAGCCAGGATCTCACATTTCTTGGGAACAAAAAGATTTGGACCCCATGAAATTTGATTTTACATATGGCCCCTCCTTCCTTTAATCTGTCACATCTAAATACATGAATCACTTCAATGTCTTTATCAGAGAAGGAACCATTCAACCATGTTTCCTAGAGAACCAGAATGTCAGGCATGAGCCCTAAACCTGTGTCAATTGTGTCAATTTTTTCTATCATACTTGTCACATTTAGTTTCATAAGCGTGAGCCCTCTATGAAG

Function

NR:

description
uncharacterized protein LOC111607635

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174298 True 341 lncRNA 0.42 1 48655291 48655631

Neighbor

gene id symbol gene type direction distance location
prr5l prr5l coding upstream 153411 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 207504 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 238233 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 521317 48027409 ~ 48133974 (+)
igf2b igf2 coding upstream 1281592 47368180 ~ 47373699 (+)
cdkn1cb LOC106560698 coding downstream 80888 48736519 ~ 48738551 (+)
LOC110490948 LOC106560694 coding downstream 1093482 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 1412578 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 1442756 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 1494830 50150461 ~ 50159171 (+)
G152207 NA non-coding upstream 39162 48615810 ~ 48616129 (+)
G152192 NA non-coding upstream 58587 48596002 ~ 48596704 (+)
G152190 NA non-coding upstream 63202 48591856 ~ 48592089 (+)
G152189 NA non-coding upstream 64600 48590381 ~ 48590691 (+)
G152171 NA non-coding upstream 93955 48561077 ~ 48561336 (+)
G152182 NA non-coding downstream 562 48656193 ~ 48657929 (+)
G152183 NA non-coding downstream 3587 48659218 ~ 48660922 (+)
G152213 LOC106613263 non-coding downstream 43566 48699197 ~ 48705189 (+)
G152589 NA non-coding downstream 134579 48790210 ~ 48790509 (+)
G152590 NA non-coding downstream 134929 48790560 ~ 48791014 (+)
G152167 NA other upstream 97605 48556782 ~ 48557686 (+)
G150997 NA other upstream 1107712 47497948 ~ 47547579 (+)
uevld uevld other upstream 1670065 46981686 ~ 47007672 (+)
G148191 NA other upstream 3162912 45472082 ~ 45492379 (+)
G147510 NA other upstream 3783791 44870800 ~ 44871500 (+)
G154859 NA other downstream 2509784 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 2666165 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 2756635 51412121 ~ 51417154 (+)
G155541 NA other downstream 2765216 51420847 ~ 51421122 (+)

Expression


Co-expression Network