G152213 (LOC106613263)


Basic Information

Item Value
gene id G152213
gene name LOC106613263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48699197 ~ 48705189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU174275
TGTGTaatggatgtgaaacggctagctagtcagCGGTGgggcgcgctaaatagcgtttcaatcggtgacgtcacttgctctgagaccttgaagtagtggttccccttgctctgcaaaggccgtggattttgtggagcgatggGGCGCAAAGACGTTTAGGGATGGGGGGACAAAATGCAATAACCCAGGAAAGTTTTCTGTGTAAAATGTCAAATGACATCAGCTTGACCGgttgtaaggaaatagaaagctTTGAAAATGACGCAACATGTTTCTTAAATGATTTCAGTTTGGCTTGGGTGCATAttttgtggttgaaatactatcagcttttataaTGCTAATACAGATATCACCTATACAGATGGTAGGCCTGTCTGAGCAtttgcattctctcaagatgctgaaggAAATCTGATTTCTTCACTGTAGCCTAAATTTGGCGTATCATATTACTTAATTATGCAGGAGTTAATGTTAAAGCTATGTGAGACGTTATAGACCTTCATTcaatgtccagatttcagttcccatttaacccatctgaacagttggctacagttcccttgaagTGCCATAGGCCTTATTTGAAGTCCCATCTTGTGACTGTAGAATTTGTAGGCTACAGCACCTCACAATCGTCACACATAACATAGGCACTGCAGTCATCCTCATTAACCACTTTACCAAATCTTTCTCAAACATTAAGTTACTTTTCTgaccctcccttctctttattttcaactctccatttcacAGGTTTTTCAGTTATTGTCTTTGGGGATCAACCTGTTTAACCAAAAGCATTTGGCGATTGGCATGTAGGCTATTTGGCATGCCTACAGTTAGGCCCTAAAGATTAAGTTTACGCACTAATGTCAGAAAacctaaaataatgaaagaaaaacctcaatgtagccttTATATAAAAATTGCACAATAactttagaaacacttcaaataggGGATGTGTTTCAcataggcttaccctggtgtgacgttttgataacaatgggtattatgactcatactgtggtactctattacAGTTTAGGTGTTTTAATAATGCTGAAGATTCACAGTAATTGGCACAGAACAGCACattcaatgtgcccttgagcaaggcacttaccctgatttgctccaggggcgctgtacatggatgaccctgtaaaacaacacatttcattgCACCTATCTGGTGTTGCCTACATTATGTGACAATGAAAACATCTTATTTACTTTAAAGGGTCTATCAGAGTACTGTATGGGTacacacagcagtgttctagaatattgtACTGTTGACATTCATACTTTTCGAATTCTCAGTGCAGCTCCAGCAAATTCTCCAACTGTCAACAAATTCAAATGTATAGAGGCCGCGTACTGGAGACTTGTTGGTTAGGAATTGTGGGGAGGTGCGTGTTTGGGCCATTCCCTTTGGATGTTGGTCTCAGAGCTGTGTAGCTATGTCACAATCAGTGGTGTGTTCTCATGGGTGCCAAGGGAAGCAAGGCTTCCACCAAGGATTGAccaaaaatatttaataaaataACAGCCAATCACCGATGAGCTAAACTGAGCGATCTCAACTGTAAATAgtcctggcacaccaaaaaaAGTGTCATTGAATAAAACTTTATTGTCCATCCAGGAAGGCCATTTTTCTTTGGCATCACCTTCATTAAAAcaatcacatacacatacattctcacatcatacacatttAAACCAGTCAGTGCATCATGTTGCATACACAACAACAGaggacattaatacattcacTCACAACAACCACTGTCCCAACTGCACTAGATACGTCCAGATACCAATATAATTTACTTTACTTTTTTAGTAGTCCAACAGCATAAGGAACAAATTAATGTTTGAACACATTCTTCTTGGCCATGGGCGTTCTGAAGCACTGGCCCGAAGAAAGCCTCTCGTGACTGAGGGTGTAGAGGGTGGGAGGGTTCGTCAACGACAGCCAGTGCCTTCTTTTTGGTTGCCTTGTGGAACAGAAGTCAtaggaagccagtttggatttaacTTCACATCACATCAAAAACAGATCGCCATTTACAGAAAAaatttgaattgttgcatcttgttgtgCTTCGGTGGCTAGCTagctagctagctacgatgatccggtgtaatgatccagagtggcaggaatccggtgatatggtagagagaagcagtccgatatgctctgggttgatatcgcgctgtgcagactggcaggtgttGTCCGATCTAAGGCTGGCTGGTGATCGAGAAAAAGGTGAAGACTgctagccgtggctaacaaagactagtagctagttagctgactAGCTCCTGATGGATGTTCCAGTTGTAATGAAATAATGGAATAAAagtagcagatccgtaccacattgggtgagctgggttgcaggaaagtacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaatacatttcacatgctgttgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacacccccaataaaggagcggttctgcaggtggtaaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcactttttaatgctggcggtgctttcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatggcacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcggagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacgtggaggagggtAACAactcagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccagagtcctgcaaaatgacctcagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactccatgagggtggtatgagggcccgacgtccacaggtgggggctgtgcttacagcccaacaccgtgccgGATGTTTGgcttttgccagagaacaccaagactggcaaattcgccactggtgccctgtgctcttcacagatgaaagcaggttcacactgagcaagtgacagagtctggagacgccgtggagaacgttctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtgtggggtggcatttctttggggggccgcacagccctccatgtgctcgccagaggtagcctgactgccataaGGTACCGATATATTatggtgcggttggccctaggttcctcctgggttcctcctaatgcaagacaatgctagacctcatgtggttggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggactggcccgcccgttccccagacctgaatccaattgagcacacctgggacatgtctcgctccatccaccaacgccacgttgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcattcccaggcgttgtagggaggtcatacatcccagttagggggagtgatgagctctacagcagagtctcacaactcaatcgctggttgaaaactgttttctgcccctcccaaaagatagaatttgtagataattggccctctttctgggactcacccacaaacaggaccaagcctgacctgctgaggagtgacggactccatcctagctggaggggtgctctcattttatctaccaacatagacagggctctaactcctctagctccacaatgaaatagggtgcaggccaggtagcaggctgttagccagcctgccagcatagtggagtctgccactagcacagtcagtgtagtcagctcagctatcaccattgagaccgtgtctgtgcctcgacctaggttgggcaaagctaaacatggcggtgttcgccttagcaatctcactggaataaagacctcctccattcctgtcattattaaaagagatcatgatacctcacatctcaaaatagggctacttaatgttagatctcttacttcaaaggcaattatagtcaatgaact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174275 True 4220 lncRNA 0.43 3 48699197 48705189

Neighbor

gene id symbol gene type direction distance location
prr5l prr5l coding upstream 197317 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 251410 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 282139 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 565223 48027409 ~ 48133974 (+)
igf2b igf2 coding upstream 1325498 47368180 ~ 47373699 (+)
cdkn1cb LOC106560698 coding downstream 31330 48736519 ~ 48738551 (+)
LOC110490948 LOC106560694 coding downstream 1043924 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 1363020 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 1393198 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 1445272 50150461 ~ 50159171 (+)
G152183 NA non-coding upstream 38275 48659218 ~ 48660922 (+)
G152182 NA non-coding upstream 41268 48656193 ~ 48657929 (+)
G152235 NA non-coding upstream 43566 48655291 ~ 48655631 (+)
G152207 NA non-coding upstream 83068 48615810 ~ 48616129 (+)
G152192 NA non-coding upstream 102493 48596002 ~ 48596704 (+)
G152589 NA non-coding downstream 85021 48790210 ~ 48790509 (+)
G152590 NA non-coding downstream 85371 48790560 ~ 48791014 (+)
G152591 NA non-coding downstream 86287 48791476 ~ 48791675 (+)
G152611 NA non-coding downstream 97791 48802980 ~ 48803181 (+)
G152617 NA non-coding downstream 100961 48806150 ~ 48806424 (+)
G152167 NA other upstream 141511 48556782 ~ 48557686 (+)
G150997 NA other upstream 1151618 47497948 ~ 47547579 (+)
uevld uevld other upstream 1713971 46981686 ~ 47007672 (+)
G148191 NA other upstream 3206818 45472082 ~ 45492379 (+)
G147510 NA other upstream 3827697 44870800 ~ 44871500 (+)
G154859 NA other downstream 2460226 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 2616607 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 2707077 51412121 ~ 51417154 (+)
G155541 NA other downstream 2715658 51420847 ~ 51421122 (+)

Expression


Co-expression Network