G152840


Basic Information

Item Value
gene id G152840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48989111 ~ 49018416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU174947
ctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaatatggttaaaattgatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174947 True 433 lncRNA 0.44 2 48989111 49018416

Neighbor

gene id symbol gene type direction distance location
cdkn1cb LOC106560698 coding upstream 250560 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 487231 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 541324 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 572053 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 855137 48027409 ~ 48133974 (+)
LOC110490948 LOC106560694 coding downstream 730697 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 1049793 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 1079971 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 1132045 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 1162884 50181300 ~ 50198685 (+)
G152832 NA non-coding upstream 11935 48976946 ~ 48977176 (+)
G152825 NA non-coding upstream 17551 48971338 ~ 48971560 (+)
G152813 NA non-coding upstream 29967 48958885 ~ 48959144 (+)
G152660 NA non-coding upstream 151173 48837714 ~ 48837938 (+)
G152617 NA non-coding upstream 182687 48806150 ~ 48806424 (+)
G152890 NA non-coding downstream 20682 49039098 ~ 49039302 (+)
G152911 NA non-coding downstream 42997 49061413 ~ 49061674 (+)
G152913 NA non-coding downstream 45100 49063516 ~ 49063752 (+)
G152916 NA non-coding downstream 46250 49064666 ~ 49064883 (+)
G152919 NA non-coding downstream 47956 49066372 ~ 49066659 (+)
G152167 NA other upstream 431425 48556782 ~ 48557686 (+)
G150997 NA other upstream 1441532 47497948 ~ 47547579 (+)
uevld uevld other upstream 2003885 46981686 ~ 47007672 (+)
G148191 NA other upstream 3496732 45472082 ~ 45492379 (+)
G147510 NA other upstream 4117611 44870800 ~ 44871500 (+)
G154859 NA other downstream 2146999 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 2303380 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 2393850 51412121 ~ 51417154 (+)
G155541 NA other downstream 2402431 51420847 ~ 51421122 (+)

Expression


Co-expression Network