G152890


Basic Information

Item Value
gene id G152890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49039098 ~ 49039302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU174999
cttcatgttacacaatacatgcatgttttgtttgatgaagttcatattgacatttaaaaaatctgagtttacattggcgtgttagattcaccagttccaaaaacatcaagtgattttgcatagccacatcattcaacagaaatactcatcataaatgtagatgataatacatggaattatagatctacctctccttaatgcaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174999 True 205 lncRNA 0.32 1 49039098 49039302

Neighbor

gene id symbol gene type direction distance location
cdkn1cb LOC106560698 coding upstream 300547 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 537218 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 591311 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 622040 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 905124 48027409 ~ 48133974 (+)
LOC110490948 LOC106560694 coding downstream 709811 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 1028907 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 1059085 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 1111159 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 1141998 50181300 ~ 50198685 (+)
G152840 NA non-coding upstream 20682 48989111 ~ 49018416 (+)
G152832 NA non-coding upstream 61922 48976946 ~ 48977176 (+)
G152825 NA non-coding upstream 67538 48971338 ~ 48971560 (+)
G152813 NA non-coding upstream 79954 48958885 ~ 48959144 (+)
G152660 NA non-coding upstream 201160 48837714 ~ 48837938 (+)
G152911 NA non-coding downstream 22111 49061413 ~ 49061674 (+)
G152913 NA non-coding downstream 24214 49063516 ~ 49063752 (+)
G152916 NA non-coding downstream 25364 49064666 ~ 49064883 (+)
G152919 NA non-coding downstream 27070 49066372 ~ 49066659 (+)
G152939 NA non-coding downstream 46631 49085933 ~ 49086463 (+)
G152167 NA other upstream 481412 48556782 ~ 48557686 (+)
G150997 NA other upstream 1491519 47497948 ~ 47547579 (+)
uevld uevld other upstream 2053872 46981686 ~ 47007672 (+)
G148191 NA other upstream 3546719 45472082 ~ 45492379 (+)
G147510 NA other upstream 4167598 44870800 ~ 44871500 (+)
G154859 NA other downstream 2126113 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 2282494 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 2372964 51412121 ~ 51417154 (+)
G155541 NA other downstream 2381545 51420847 ~ 51421122 (+)

Expression


Co-expression Network