G152919


Basic Information

Item Value
gene id G152919
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49066372 ~ 49066659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU175028
caaccatacaattcctttgactttagaaatgaaaaggaactcAGCTACCTCATGATTTAGCTCAcggcattctgccagacacctgactcaaacagctctcattctctcccccttcacagtagaagcctgaaacaaggttctaaagactgttgacatctagtggaatatgaccccatagacactgtatattcaataggcaatgacttgaaatactacaaacctcagatttcccactttctggtggatttttttctcagatttttgcctgccatatgagtttggttatac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175028 True 288 lncRNA 0.46 1 49066372 49066659

Neighbor

gene id symbol gene type direction distance location
cdkn1cb LOC106560698 coding upstream 327821 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 564492 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 618585 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 649314 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 932398 48027409 ~ 48133974 (+)
LOC110490948 LOC106560694 coding downstream 682454 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 1001550 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 1031728 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 1083802 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 1114641 50181300 ~ 50198685 (+)
G152916 NA non-coding upstream 1489 49064666 ~ 49064883 (+)
G152913 NA non-coding upstream 2620 49063516 ~ 49063752 (+)
G152911 NA non-coding upstream 4698 49061413 ~ 49061674 (+)
G152890 NA non-coding upstream 27070 49039098 ~ 49039302 (+)
G152840 NA non-coding upstream 47956 48989111 ~ 49018416 (+)
G152939 NA non-coding downstream 19274 49085933 ~ 49086463 (+)
G153015 peak1 non-coding downstream 150684 49217343 ~ 49218426 (+)
G153137 hmg20a non-coding downstream 388448 49455107 ~ 49459615 (+)
G153238 NA non-coding downstream 484850 49551509 ~ 49551842 (+)
G153260 NA non-coding downstream 514748 49581407 ~ 49581617 (+)
G152167 NA other upstream 508686 48556782 ~ 48557686 (+)
G150997 NA other upstream 1518793 47497948 ~ 47547579 (+)
uevld uevld other upstream 2081146 46981686 ~ 47007672 (+)
G148191 NA other upstream 3573993 45472082 ~ 45492379 (+)
G147510 NA other upstream 4194872 44870800 ~ 44871500 (+)
G154859 NA other downstream 2098756 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 2255137 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 2345607 51412121 ~ 51417154 (+)
G155541 NA other downstream 2354188 51420847 ~ 51421122 (+)

Expression


Co-expression Network