G152939


Basic Information

Item Value
gene id G152939
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49085933 ~ 49086463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU175057
TCGAGTTGTACTGTTTATGCACAGTATTTTTATTAACAAATAATATAAAAGAAAATACTAGAATAATAGAAATGTCAAATTATCATACAGGTGCAAAAGCAGCAAGAGTGATGGGAAAACATTGTAATTACAGGCACTTTGTTCAAGCGGCCAAGTTCATTGAAGACGTGACATGGTACATCAATGGTTCATCCATAGgctacatacaaacacacacaaagtgtTGCACAGAATACCGAAATGTCTGTACTTTTTCAATACTAGAACATGAAAAACGGTTCAGTTCTAAAATTGCTCTTACTTTCGGCACTTCTGTTAAATGTGTCACACGGATCAACTCTGTCTACCAGCGCAACCAGTCCACTTATAGCAGgaaataatgtaataataatatatgcatATGTATGCATATATATACACTTATAGATGTATTGTTAAAATATACAATAATAGGCCAGTTTCATATAAGTGAATCTTATCTTATATAcacaaatgtacagtgccttgcgaaagtattcggcccccttgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175057 True 531 lncRNA 0.34 1 49085933 49086463

Neighbor

gene id symbol gene type direction distance location
cdkn1cb LOC106560698 coding upstream 347382 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 584053 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 638146 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 668875 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 951959 48027409 ~ 48133974 (+)
LOC110490948 LOC106560694 coding downstream 662650 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 981746 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 1011924 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 1063998 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 1094837 50181300 ~ 50198685 (+)
G152919 NA non-coding upstream 19274 49066372 ~ 49066659 (+)
G152916 NA non-coding upstream 21050 49064666 ~ 49064883 (+)
G152913 NA non-coding upstream 22181 49063516 ~ 49063752 (+)
G152911 NA non-coding upstream 24259 49061413 ~ 49061674 (+)
G152890 NA non-coding upstream 46631 49039098 ~ 49039302 (+)
G153015 peak1 non-coding downstream 130880 49217343 ~ 49218426 (+)
G153137 hmg20a non-coding downstream 368644 49455107 ~ 49459615 (+)
G153238 NA non-coding downstream 465046 49551509 ~ 49551842 (+)
G153260 NA non-coding downstream 494944 49581407 ~ 49581617 (+)
G153261 NA non-coding downstream 495459 49581922 ~ 49582239 (+)
G152167 NA other upstream 528247 48556782 ~ 48557686 (+)
G150997 NA other upstream 1538354 47497948 ~ 47547579 (+)
uevld uevld other upstream 2100707 46981686 ~ 47007672 (+)
G148191 NA other upstream 3593554 45472082 ~ 45492379 (+)
G147510 NA other upstream 4214433 44870800 ~ 44871500 (+)
G154859 NA other downstream 2078952 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 2235333 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 2325803 51412121 ~ 51417154 (+)
G155541 NA other downstream 2334384 51420847 ~ 51421122 (+)

Expression


Co-expression Network