G153137 (hmg20a)


Basic Information

Item Value
gene id G153137
gene name hmg20a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 49455107 ~ 49459615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU175275
gatgggaatGTCGAACACAGACCTTTCCTTGCCTTCTGTGTCCTTCTCGTGAAGAGATTCGTTGGCTACCTGGTGCCCGCCATCTCCCCGGTGCCTCTTGACCTTCTGTTTCTCCTGCACCTTCCGGGTGAAGTGCTTGTAGGCCTCCGTCTTCTGGTACTTCTCCAGGTCACGCATGTAGCGCTCCTTGTCCCTCTCCGCCTCGTCCAGGTAGCGCTGCTTGTCTTCCGGCGGCAGCTTGCTCCACTCATTGCCCAGCATCCTGGTGATCTCTGGGAAGGGCACGTCAGGCCGCTCGGCCCTCAGCTGCTCACGCCGGTCGTTCATGAAGCGCACATAGCCCGTTAGCGGTGCCTTGGGGGCGTTGCTGTCCTTCACTGGCTTCTTCCTCTTACGGCCCTTGGTCCAGCTGCTGCGCCTGGGCTTCTgcggagagggggtgggagatgTGGCAAAACAAACACAGCTGAAGTTAGCACTTCTCCTAAATGGTGCTTGCTCTGGAATCCAAACGTGTATCCTCTGTTGAAACAGTTTGGATTCCAGGCAAG
>TU175276
gatgggaatGTCGAACACAGACCTTTCCTTGCCTTCTGTGTCCTTCTCGTGAAGAGATTCGTTGGCTACCTGGTGCCCGCCATCTGTGAGAAAGgaaataaacatatattttttaaagggaCAGGAGATGATTCATACTTCCTCTGCGCAGCGTGCCTTTGCTACATCTTGAACTAATTGAGGATGAGTCAAAGAGCCGTGTTAAACTA

Function

symbol description
hmg20a Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20A (high mobility group 20A).

NR:

description
PREDICTED: high mobility group protein 20A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175275 False 551 lncRNA 0.58 4 49455107 49459615
TU175276 True 209 lncRNA 0.44 2 49455107 49456581

Neighbor

gene id symbol gene type direction distance location
cdkn1cb LOC106560698 coding upstream 716556 48736519 ~ 48738551 (+)
prr5l prr5l coding upstream 953227 48481528 ~ 48501880 (+)
fcsk fuk coding upstream 1007320 48394983 ~ 48447787 (+)
LOC118940424 NA coding upstream 1038049 48412707 ~ 48417058 (+)
osbpl5 LOC106560704 coding upstream 1321133 48027409 ~ 48133974 (+)
LOC110490948 LOC106560694 coding downstream 289498 49749113 ~ 49767125 (+)
LOC110491010 LOC106560692 coding downstream 608594 50068209 ~ 50093310 (+)
LOC110491026 LOC106560691 coding downstream 638772 50098387 ~ 50100624 (+)
LOC110491039 LOC106560690 coding downstream 690846 50150461 ~ 50159171 (+)
LOC110491040 LOC106560688 coding downstream 721685 50181300 ~ 50198685 (+)
G153015 peak1 non-coding upstream 236681 49217343 ~ 49218426 (+)
G152939 NA non-coding upstream 368644 49085933 ~ 49086463 (+)
G152919 NA non-coding upstream 388448 49066372 ~ 49066659 (+)
G152916 NA non-coding upstream 390224 49064666 ~ 49064883 (+)
G152913 NA non-coding upstream 391355 49063516 ~ 49063752 (+)
G153238 NA non-coding downstream 91894 49551509 ~ 49551842 (+)
G153260 NA non-coding downstream 121792 49581407 ~ 49581617 (+)
G153261 NA non-coding downstream 122307 49581922 ~ 49582239 (+)
G153274 NA non-coding downstream 141807 49601422 ~ 49601642 (+)
G153275 NA non-coding downstream 142508 49602123 ~ 49602332 (+)
G152167 NA other upstream 897421 48556782 ~ 48557686 (+)
G150997 NA other upstream 1907528 47497948 ~ 47547579 (+)
uevld uevld other upstream 2469881 46981686 ~ 47007672 (+)
G148191 NA other upstream 3962728 45472082 ~ 45492379 (+)
G147510 NA other upstream 4583607 44870800 ~ 44871500 (+)
G154859 NA other downstream 1705800 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 1862181 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 1952651 51412121 ~ 51417154 (+)
G155541 NA other downstream 1961232 51420847 ~ 51421122 (+)

Expression


Co-expression Network