G154271 (LOC105007919)


Basic Information

Item Value
gene id G154271
gene name LOC105007919
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50091176 ~ 50093305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU176472
TTTTATTTGGTAACTTTATTGAAGTCATCCCCCTCCCCCAATTTGTAAAATGAAACCAAACTAATGAATAAAAAAGGGGTGGAAAATAAATAGTTTGTACTGGATTTTGATTTGCCTATAGGGTTTGTCGAGTCCAAATatctttgcaaaaaaaaaaaaaaaactcccaaTACCCCCCTCTGTACACCGTCATGCTCTCCCCCAAAAATGTCAATGAACGTTTAGAACAAGGGTTCAATGTCAACCCGTGTGAAATGTCAATTATACACACTAGAAATATCTACCAACATGTTTGGAACACCACTAAGTGTATTCAAATAATTGCTATACTTCCAAGGGGGTACTTCCAAGGGGGCATATggaacaaaaaaaacaatcaaacaGATTAACAATGTCATCCCTTGTTTCTGTTTAAAAACACTCCTGCAGAAAAACTACTGCATATCAGCAATGGATAGTGATTGAATATAACTTCGATGCAAATAAAGAATGGAACTGAATGATGCAATCCCCATCCCCCAAGAAGTCACCATTTCCTATTGAAATGGAGTCGCAAGGGTCCTTGTAGACCACAAGGATATCAAGTCTGCTGCTAATACAAACATAGCAAATCTCATCTGTAGCCAAGTAAAATACAATTCTTGATTTTTATGAAGCAAGGCGATCCATAGAAAAACAAATGAGTGGGGCTGAGCTGAGGGACCGCAGAGGGCATGGAAGAGGAGGAAAACAGGAGTTCCCCTAACCCATTTAAGAGCGCAAAATTGGGATACGTGGGAGGCTTGGTTAGGTGGGTGATAGGTAGGAAACGGGAGATGTTAgagaattgggggggggggtagtgggaTGATGATGGTCTGTAGAGTGTTAAGGTATCACCAGCAGGCAGGGTGCCAGGGGTAGTCTAGATCAGGTCAGCCACATTCATGGGCATCTCTTCTACTGTGGTGTTGTAGAACGTCTCAATGTCCCGGAGTGTGCGCTTGTCCTCTTCAGTCACCATGTTGATGGCAACACCCTTCCTGCCGAAACGGCCTCCTCGCCCGATCCTGGCACACAACAATTAAAGACTGTGAATGTAGTTCTCACGATTGGTTGGCAGGTCATAGTTGATAACCAGAGACACCTGTTGGACATCAATTCCTCGGGCCAGCAGATCTGTGGTGATGAGGACACGGCTGGAGCCAGAGCGGAACTCCCTCATGATTAGGTCCCTCTCCTTCTGGTCCATGTCACCGTGCTGGGGAGGAAGGAAGGTGTCACATTTTACATTTAGTAGACTCTTATGCAGACCCACTTATAGTCAAACAAGACAGTCAGCCTGGATCTGTGAACACCACAAGCACTTCATTTCACATTACGGAAATCAAAAACCAAGAAATGCTGATCTAACCAGATCGACAGTATGTTTTCCACACAAATAGAGGCACTAAGAAACAATGGAGAAACTTAAGATTCTGC

Function

NR:

description
PREDICTED: eukaryotic initiation factor 4A-I-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176472 True 1461 lncRNA 0.54 3 50091176 50093305

Neighbor

gene id symbol gene type direction distance location
LOC110490984 LOC106560693 coding downstream 53284 49962896 ~ 50037892 (-)
LOC110490968 LOC105006464 coding downstream 254129 49801952 ~ 49837047 (-)
LOC118936760 NA coding downstream 351930 49738842 ~ 49739246 (-)
hmg20a hmg20a coding downstream 615805 49451688 ~ 49475371 (-)
peak1 peak1 coding downstream 663893 49166669 ~ 49427283 (-)
plscr3a LOC106560726 coding upstream 31256 50124561 ~ 50127403 (-)
LOC118937274 NA coding upstream 36210 50129515 ~ 50131269 (-)
LOC110491057 LOC100136935 coding upstream 178913 50272218 ~ 50287727 (-)
LOC110491068 larp1 coding upstream 381327 50474632 ~ 50561307 (-)
rbm41 rbm41 coding upstream 571991 50665296 ~ 50678813 (-)
G154249 NA non-coding downstream 106167 49984745 ~ 49985009 (-)
G154241 NA non-coding downstream 113358 49977608 ~ 49977818 (-)
G153988 NA non-coding downstream 151429 49939297 ~ 49939747 (-)
G153958 NA non-coding downstream 179184 49911571 ~ 49911992 (-)
G153957 NA non-coding downstream 179660 49911230 ~ 49911516 (-)
G154307 NA non-coding upstream 22744 50116049 ~ 50116251 (-)
G154310 NA non-coding upstream 26015 50119320 ~ 50119588 (-)
G154313 NA non-coding upstream 34418 50127723 ~ 50127951 (-)
G154316 NA non-coding upstream 38210 50131515 ~ 50131798 (-)
G152024 NA other downstream 1787513 48303311 ~ 48303663 (-)
G151920 NA other downstream 1864232 48226299 ~ 48226944 (-)
G151875 NA other downstream 1902898 48187958 ~ 48188278 (-)
G151474 NA other downstream 2239828 47850785 ~ 47851348 (-)
G150675 LOC100653436 other downstream 2885743 47194893 ~ 47205433 (-)
G154300 NA other upstream 8125 50101430 ~ 50107447 (-)
G154338 NA other upstream 63381 50156686 ~ 50157825 (-)
G155003 NA other upstream 322438 50415743 ~ 50452147 (-)
G155072 NA other upstream 486493 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 877771 50971076 ~ 50971935 (-)

Expression


Co-expression Network