G155012


Basic Information

Item Value
gene id G155012
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50432609 ~ 50470119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU177330
ttttgttaAGGTTTTATTCTGCAACAATGGCACAGTTTATGAATTACGGGTCATGTAAAAATCTATACTGACTCCCAAATCTCAACCCAGGAGTCAGACTCTACAGAGCACAACCCTTTAAGGACCAATTTATCATTCAATCAATACAGATCATACAAATGGTGACAAAGTTGATTGTATGGTTTTATTCTGCAACAATGGCACAGTTTATGAATTATGGGTCATGTAAAAATCTATACTGACTCCCAAATCTCAACCCAGGAGTCAGACTCTACAGAGCACAACCCTTTAAGGACCAATTTATCATTCAATCAATACAGATCATACAAATGGTGACAAAGTTGATTGTATGGTTTTCCATAGACCAAAATCCACAAACTTACTAACAATAAGCATACTGTAATCTCCTTATATTAGTATGTTTTTCTCCAGTTACACAGGAATCACTCAAATAACTGCATCTTTAATATGTGTGCCAATTACAGTAATAAAGTGCCGTCCAACAATCAGATTATAAAATGTAGTATTTATAATTAAAAAGCGGTTTGTCCCGTCCTTATCTCCAAGCTGCAAAGTTTATACTTAACAGCGGAGAACAAGGTTAGACTGAAAAGGTAGAAAGTGCTACTGCTAGGAACGTTATAACAAGATGAAACAAAAGTCTTCTGATCATGTAGGTAAAAATAAGTAAATTACCACCATGTGTTTTCAGTGTAATGAGGTGCTAGAGTCAGGGATAGGATGTAGATGCACAAAAGTAAACAGCATATTGGGTCAACttccgcaacaactaagagcgttggAGCACGAGGCTAAACTTCTCCCGTTTTTTTGTCCCGCGGCTACCACGTTGTAAGAGCGTGAAGCAAGCCTGTGCACATGCGCAGATAGCGTGTGTGACTGTGAGAGCAAAGTCTTGCATCTTGCTCATCACAACATCTGCGTTGCTGCTCGTGCAACGTCATTTTGCTGACTCTACCTTTAATAAGAACTCCACTGTCTCGACTACCAAGATTAGAAAGGAACAGTGTGAGGAGGAGCCAGCCCAGTGCCAGACTTGAGGATGGGAATACTGATTGCATCTCtataatctctcctttctctgtgcACTTGATCATAGATTTTCCTCTAGCTCAtgtttacaccaatccaatgATTTTAACCGTATGGACGAGTGCACACTACAGGAGTAAGGAGAGATTATTGGGATGTAGGTGGAGGTCAGAAGTGACGGGGTAGAATCACTGGACCTTCTTGGGGGGGTCTGGGATGCTCTCGGTCAGAGGGGTGAGGCTGAGCAGCAGGGTGTGACGCTCGTAAGCCTTGGTCTTCCTGAAGTTGGCGTCGGTCCCGTGTAGCCTGTCCAGAACCCCCAGGACTCCAAAGTTCTGGTTGAAC
>TU177332
ttttgttaAGGTTTTATTCTGCAACAATGGCACAGTTTATGAATTACGGGTCATGTAAAAATCTATACTGACTCCCAAATCTCAACCCAGGAGTCAGACTCTACAGAGCACAACCCTTTAAGGACCAATTTATCATTCAATCAATACAGATCATACAAATGGTGACAAAGTTGATTGTATGGTTTTCCATAGACCAAAATCCACAAACTTACTAACAATAAGCATACTGTAATCACCTTATATTAGTACGTTTTTCTCCAGTTACACAGGAATCACTCAAAGAACTGCATCTTTAATATGTGTGCCAATTACAGTAATAAAGTGCCGTCCAACAATCAGATTATAAAATGTAGTATTTATAATTAAAAAGCGGTATGTCCCGTCCTTATCTCCAAGCTGCAAAGTTTATACTTAACAGCGGAGAACAAGGTTAGACTGAAAAGGTAGAAAGTGCTACTGCTAGGAACGTTATAACAAGATGAAACAAAAGTCTTCTGATCATGTAGGTAAAAATAAGTAAATTACCACCATGTGTTTTCAGTGTAATGAGGTGCTAGAGTCAGGGATAGGATGTAGATGAAACAAAAGTCTTCTGATCATGTAGGTAAAAATAAGTAAATTACCACCATGTGTTTTCAGTGTAATGAGGTGCTAGAGTCAGGGATAGGATGTAGATGCACAAAAGTAAACAGCATATTGGGTCAACttccgcaacaactaagagcgttggAGCACGAGGCTAAACTTCTCCCGTTTTTTTGTCCCGCGGCTACCACGTTGTAAGAGCGTGAAGCAAGCCTGTGCACATGCGCAGATAGCGTGTGTGACTGTGAGAGCAAAGTCTTGCATCTTGCTCATCACAACATCTGCGTTGCTGCTCGTGCAACGTCATTTTGCTGACTCTACCTTTAATAAGAACTCCACTGTCTCGACTACCAAGATTAGAAAGGAACAGTGTGAGGAGGAGCCAGCCCAGTGCCAGACTTGAGGATGGGAATACTGATTGCATCTCtataatctctcctttctctgtgcACTTGATCATAGATTTTCCTCTAGCTCAtgtttacaccaatccaatgATTTTAACCGTATGGACGAGTGCACACTACAGGAGTAAGGAGAGATTATTGGGATGTAGGTGGAGGTCAGAAGTGACGGGGTAGAATCACTGGACCTTCTTGGGGGGGTCTGGGATGCTCTCGGTCAGAGGGGTGAGGCTGAGCAGCAGGGTGTGACGCTCGTAAGCCTTGGTCTTCCTGAAGTTGGCGTCGGTCCCGTGTAGCCTGTCCAGAACCCCCAGGACTCCAAAGTTCTGGTTGAAC
>TU177333
ttttgttaAGGTTTTATTCTGCAACAATGGCACAGTTTATGAATTACGGGTCATGTAAAAATCTATACTGACTCCCAAATCTCAACCCAGGAGTCAGACTCTACAGAGCACAACCCTTTAAGGACCAATTTATCATTCAATCAATACAGATCATACAAATGGTGACAAAGTTGATTGTATGGTTTTCCATAGACCAAAATCCACAAACTTACTAACAATAAGCATACTGTAATCACCTTATATTAGTACGTTTTTCTCCAGTTACACAGGAATCACTCAAAGAACTGCATCTTTAATATGTGTGCCAATTACAGTAATAAAGTGCCGTCCAACAATCAGATTATAAAATGTAGTATTTATAATTAAAAAGCGGTATGTCCCGTCCTTATCTCCAAGCTGCAAAGTTTATACTTAACAGCGGAGAACAAGGTTAGACTGAAAAGGTAGAAAGTGCTACTGCTAGGAACGTTATAACAAGATGAAACAAAAGTCTTCTGATCATGTAGGTAAAAATAAGTAAATTACCACCATGTGTTTTCAGTGTAATGAGGTGCTAGAGTCAGGGATAGGATGTAGATGCACAAAAGTAAACAGCATATTGGGTCAACttccgcaacaactaagagcgttggAGCACGAGGCTAAACTTCTCCCGTTTTTTTGTCCCGCGGCTACCACGTTGTAAGAGCGTGAAGCAAGCCTGTGCACATGTGCAGATAGCGTGTGTGACTGTCTTGCATCTTGCTCATCACAACATCTGCGTTGCTGCTCGTGCAACGTCATTTTGCTGACTCTACCTTTAATAAGAACTCCACTGTCTCGACTACCAAGATTAGAAAGGAACAGTGTGAGGAGGAGCCAGCCCAGTGCCAGACTTGAGGATGGGAATACTGATTGCATCTCtataatctctcctttctctgtgcACTTGATCATAGATTTTCCTCTAGCTCAtgtttacaccaatccaatgATTTTAACCGTATGGACGAGTGCACACTACAGGAGTAAGGAGAGATTATTGGGATGTAGGTGGAGGTCAGAAGTGACGGGGTAGAATCACTGGACCTTCTTGGGGGGGTCTGGGATGCTCTCGGTCAGAGGGGTGAGGCTGAGCAGCAGGGTGTGACGCTCGTAAGCCTTGGTCTTCCTGAAGTTGGCGTCGGTCCCGTGTAGCCTGTCCAGAACCCCCAGGACTCCAAAGTTCTGGTTGAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177330 False 1398 lncRNA 0.42 2 50432609 50470119
TU177332 False 1325 lncRNA 0.42 2 50432609 50470119
TU177333 True 1216 lncRNA 0.43 2 50432609 50470119

Neighbor

gene id symbol gene type direction distance location
LOC110491057 LOC100136935 coding downstream 144882 50272218 ~ 50287727 (-)
LOC118937274 NA coding downstream 301626 50129515 ~ 50131269 (-)
plscr3a LOC106560726 coding downstream 305206 50124561 ~ 50127403 (-)
LOC110490984 LOC106560693 coding downstream 394717 49962896 ~ 50037892 (-)
LOC110490968 LOC105006464 coding downstream 595562 49801952 ~ 49837047 (-)
LOC110491068 larp1 coding upstream 4513 50474632 ~ 50561307 (-)
rbm41 rbm41 coding upstream 195177 50665296 ~ 50678813 (-)
LOC110491182 LOC106602821 coding upstream 436517 50906636 ~ 50954275 (-)
LOC110491226 NA coding upstream 514013 50984132 ~ 50984985 (-)
LOC110491241 LOC106560679 coding upstream 571818 51039870 ~ 51050197 (-)
G155009 NA non-coding downstream 2549 50429551 ~ 50430060 (-)
G154430 NA non-coding downstream 128460 50301824 ~ 50304149 (-)
G154355 NA non-coding downstream 235627 50178803 ~ 50196982 (-)
G154316 NA non-coding downstream 300811 50131515 ~ 50131798 (-)
G155042 NA non-coding upstream 54097 50524216 ~ 50524480 (-)
G155060 NA non-coding upstream 92657 50562776 ~ 50563027 (-)
G155064 NA non-coding upstream 100247 50570366 ~ 50570567 (-)
G155070 NA non-coding upstream 104842 50574961 ~ 50575278 (-)
G155073 NA non-coding upstream 117281 50587400 ~ 50587940 (-)
G154338 NA other downstream 274784 50156686 ~ 50157825 (-)
G154300 NA other downstream 325162 50101430 ~ 50107447 (-)
G152024 NA other downstream 2128946 48303311 ~ 48303663 (-)
G151920 NA other downstream 2205665 48226299 ~ 48226944 (-)
G151875 NA other downstream 2244331 48187958 ~ 48188278 (-)
G155072 NA other upstream 109679 50579798 ~ 50581349 (-)
G155281 LOC106560681 other upstream 500957 50971076 ~ 50971935 (-)
G155610 NA other upstream 942150 51412269 ~ 51417110 (-)
snx33 snx33 other upstream 2562783 53032902 ~ 53112547 (-)

Expression


Co-expression Network