G154517


Basic Information

Item Value
gene id G154517
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50442005 ~ 50444553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU176763
GTTGAACACCCCTACTCTAAACATCTCTATGCAACAGGGATTATTTTAATGTTAACAAACCCACTTGCTCAGTACTTCGACCCTAGAAAAACTTGAGGAAGCATGATAGCACTCACGTAGCCAGCAGTGAAAAAGTTGTAGTAAAGGTCTCTAAACGTGTACTTTGACAGGTTTCCCTAGTAGTAAAGAGTaaaagacaaaatgtaactgacaggtttcactagtagtaaagagtaaaagacaaaatgtaactgacaggtttcactagtagtaaagagtagaagacaaaatgtaactgacaggtttctctAGTAGTAAagagtagaagacaaaatgtaactgacaggtttccctagtagtaaaaagtagaagacaaaatgtaaccgTCTGACAGGTTTCCCTAGTAGTAAAAcgtagaaaacaaaatgtaactgacaggtttctctAGTAGTAAagagtagaagacaaaatgtaactgacaggtttccctagtagtaaaaagtagaagacaaaatgtaaccgTCTGACAGGTTTCCCTAGTAGTAAAAcgtagaaaacaaaatgtaactgacaggtttccctAGTAGTAAAacgtagaagacaaaatgtaactgacaggctTCCCTAGTAGTAAAatgtagaaaacaaaatgtaactgacaggtttccctAGTAGTAAAATGTAGAAGCCAAAATGTAACTGTCAGACAGgtttccctagtagtaaaaagtagaaaacaaaatgtaactgacaggtttcactagt
>TU176766
GTTGAACACCCCTACTCTAAACATCTCTATGCAACAGGGATTATTTTAATGTTAACAAACCCACTTGCTCAGTACTTCGACCCTAGAAAAACTTGAGGAAGCATGATAGCACTCACGTAGCCAGCAGTGAAAAAGTTGTAGTAAAGGTCTCTAAACGTGTACTTTGACAGGTTTCCCTAGTAGTAAAGAGTaaaagacaaaatgtaactgacaggtttctctAGTAGTAAagagtagaagacaaaatgtaactgacaggtttcactagtagtaaagagtagaagacaaaatgtaactgacaggtttcactagtagtaaagagtaaaagacaaaatgtaactgacaggtttcactagtagtaaaaagtagaaaacaaaatgtaactgacaggtttcactagtagtaaagagtagaagacaaaatgtaactgacaggtttcactagcagtaaaaagtagaagacaaaatgtaactgacaggtttcactagtagtaaaaagtagaagacaaaatgtaactgacaggtttcactagtagtaaaaagtagaagacaaaatgtaactgacaggtttcactagtagtaaagagtagaagacaaaatgtaactgacaggtttccctagtagtaaaaagtagaaaactaaatgtaactgacaggttttactagtagtaaaaagtagaagaGAACATTTAACCTTCTTTAACAGGTTTCACTAGTAGCAAAAAGTAgtagacaaaatgtaactgacaggtttctctAGTAGTAAagagtagaagacaaaatgtaactgacaggtttccctagtagtaaaaagtagaagacaaaatgtaaccgTCTGACAGGTTTCCCTAGTAGTAAAAcgtagaaaacaaaatgtaactgacaggtttccctAGTAGTAAAacgtagaagacaaaatgtaactgacaggctTCCCTAGTAGTAAAatgtagaaaacaaaatgtaactgacaggtttccctAGTAGTAAAATGTAGAAGCCAAAATGTAACTGTCAGACAGGTTTCcctagtagtaaaaagtagaaaacaaaatgtaactgacaggtttcactagtagtaaaaagtagaaaacaaaatg
>TU176765
tagtaaaaagtagaagacaaaatgtaactgacaggtttcactagtagtaaaACGTAGAAGACAAAAGGTAGCTGACAGGTTTCtctagtagtaaaaagtagaaaacaaaatgtaactgacaggtttcactagtaataaagagtaaaagacaaaatgtaactgacaggtttcactagtagtaaaaagtagaagacaaaatgtaactgacaggtttcactagtagtaaaaagtagaagacaaaatgtaactgacaggtttctctagtagtaaaaagtagaagaGAACATTTAACCTTCTTTAACAGGTTTCACTAGTAGCAAAAAGTAgtagacaaaatgtaactgacaggtttctctAGTAGTAAagagtagaagacaaaatgtaactgacaggtttccctAGTAGTAAAAcgtagaaaacaaaatgtaactgacaggtttccctagtagtaaaatgtagaaaacaaaatgtaactgacaggtttccctagtagtaaaatgtagaaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176763 False 765 lncRNA 0.36 3 50442005 50444553
TU176766 False 1098 lncRNA 0.34 4 50442005 50443370
TU176765 True 510 lncRNA 0.32 2 50443435 50444304

Neighbor

gene id symbol gene type direction distance location
LOC110510939 faxdc2 coding upstream 8449 50424133 ~ 50433556 (+)
LOC110491046 LOC106560687 coding upstream 205779 50223738 ~ 50236226 (+)
LOC110491040 LOC106560688 coding upstream 243320 50181300 ~ 50198685 (+)
LOC110491039 LOC106560690 coding upstream 282834 50150461 ~ 50159171 (+)
LOC110491026 LOC106560691 coding upstream 341381 50098387 ~ 50100624 (+)
LOC110515922 faxdc2 coding downstream 15794 50460347 ~ 50470125 (+)
zgc:56585 pgdh coding downstream 130863 50575416 ~ 50580216 (+)
LOC110491108 NA coding downstream 234261 50678814 ~ 50689147 (+)
LOC110491126 LOC106602822 coding downstream 273027 50717580 ~ 50884089 (+)
LOC110491193 LOC106560681 coding downstream 515578 50960131 ~ 50972173 (+)
G154431 NA non-coding upstream 44763 50304873 ~ 50397242 (+)
G154204 NA non-coding upstream 175846 50265935 ~ 50266159 (+)
G154199 NA non-coding upstream 182332 50259394 ~ 50259673 (+)
G154180 NA non-coding upstream 197726 50237477 ~ 50244279 (+)
G154119 NA non-coding upstream 312932 50128859 ~ 50129073 (+)
G154524 NA non-coding downstream 33335 50477888 ~ 50479523 (+)
G154525 NA non-coding downstream 33887 50478440 ~ 50488294 (+)
G154526 NA non-coding downstream 34159 50478712 ~ 50480108 (+)
G154527 NA non-coding downstream 34227 50478780 ~ 50487600 (+)
G154548 NA non-coding downstream 64728 50509281 ~ 50509791 (+)
G152167 NA other upstream 1884319 48556782 ~ 48557686 (+)
G150997 NA other upstream 2894426 47497948 ~ 47547579 (+)
uevld uevld other upstream 3456779 46981686 ~ 47007672 (+)
G148191 NA other upstream 4949626 45472082 ~ 45492379 (+)
G154859 NA other downstream 720862 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 877243 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 967713 51412121 ~ 51417154 (+)
G155541 NA other downstream 976294 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1371957 51816510 ~ 51824182 (+)

Expression


Co-expression Network