G154580 (LOC108238713)


Basic Information

Item Value
gene id G154580
gene name LOC108238713
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50563883 ~ 50564185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU176835
ctccaacctaagcgtgacagaggagtttttggctttacgtcctatgcatggctcaactacggggcatgatttgtatgaagaggtgtcaagatgtgtaaatgagatggagctgccttgggaaaaactcgtgggtttgacaaccgacggagcacctgcgatgtgtggacacaggagcggactggtggcgaagatacgggaaaagatgcaagaggaaaacgcgacaggtgagctgacagcttatcattgtatcatacaccaggaagcgttgtgcggtaaagccttgaaaatggagcatgtaatgag

Function

NR:

description
general transcription factor II-I repeat domain-containing 2-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176835 True 303 lncRNA 0.46 1 50563883 50564185

Neighbor

gene id symbol gene type direction distance location
LOC110515922 faxdc2 coding upstream 93758 50460347 ~ 50470125 (+)
LOC110510939 faxdc2 coding upstream 130327 50424133 ~ 50433556 (+)
LOC110491046 LOC106560687 coding upstream 327657 50223738 ~ 50236226 (+)
LOC110491040 LOC106560688 coding upstream 365198 50181300 ~ 50198685 (+)
LOC110491039 LOC106560690 coding upstream 404712 50150461 ~ 50159171 (+)
zgc:56585 pgdh coding downstream 11231 50575416 ~ 50580216 (+)
LOC110491108 NA coding downstream 114629 50678814 ~ 50689147 (+)
LOC110491126 LOC106602822 coding downstream 153395 50717580 ~ 50884089 (+)
LOC110491193 LOC106560681 coding downstream 395946 50960131 ~ 50972173 (+)
sat2b sat2 coding downstream 418773 50982958 ~ 51008552 (+)
G154579 NA non-coding upstream 894 50562705 ~ 50562989 (+)
G154548 NA non-coding upstream 54092 50509281 ~ 50509791 (+)
G154525 NA non-coding upstream 75589 50478440 ~ 50488294 (+)
G154527 NA non-coding upstream 76283 50478780 ~ 50487600 (+)
G154526 NA non-coding upstream 83775 50478712 ~ 50480108 (+)
G154582 NA non-coding downstream 2638 50566823 ~ 50567119 (+)
G154583 NA non-coding downstream 3492 50567677 ~ 50567985 (+)
G154584 NA non-coding downstream 4139 50568324 ~ 50568755 (+)
G154593 NA non-coding downstream 21348 50585533 ~ 50586189 (+)
G154594 NA non-coding downstream 23089 50587274 ~ 50587589 (+)
LOC110491026 LOC106560691 other upstream 463409 50098387 ~ 50100624 (+)
G152167 NA other upstream 2006197 48556782 ~ 48557686 (+)
G150997 NA other upstream 3016304 47497948 ~ 47547579 (+)
uevld uevld other upstream 3578657 46981686 ~ 47007672 (+)
G148191 NA other upstream 5071504 45472082 ~ 45492379 (+)
G154859 NA other downstream 601230 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 757611 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 848081 51412121 ~ 51417154 (+)
G155541 NA other downstream 856662 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1252325 51816510 ~ 51824182 (+)

Expression


Co-expression Network