G154592


Basic Information

Item Value
gene id G154592
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50588429 ~ 50588723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU176847
TAAAGTGGCATGATGACCTTGATAAAAATGGGGAAAGCTCTTTTAAGATGCTCAGCATCTGTCATTTAACACGAGGAACAAGTTGATGCAATTCAATACTTTACATAGGGTCTACTTTACACCAGAGAGTCTGTATAAGATCAATtctaaatattcaacattttgccCAAGGTGTAAAACGGGAGTGGGCACACGTATGCATATGTTTTTGTCCTGCCCTGAACTAAGCAATTATTGGTAAGACATTATTCAGATCTTATCACAGGTCACTAATATGACGGTACCACTATATCCT

Function

NR:

description
Retrovirus-related Pol polyprotein LINE-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176847 True 295 lncRNA 0.39 1 50588429 50588723

Neighbor

gene id symbol gene type direction distance location
zgc:56585 pgdh coding upstream 8213 50575416 ~ 50580216 (+)
LOC110515922 faxdc2 coding upstream 118304 50460347 ~ 50470125 (+)
LOC110510939 faxdc2 coding upstream 154873 50424133 ~ 50433556 (+)
LOC110491046 LOC106560687 coding upstream 352203 50223738 ~ 50236226 (+)
LOC110491040 LOC106560688 coding upstream 389744 50181300 ~ 50198685 (+)
LOC110491108 NA coding downstream 90091 50678814 ~ 50689147 (+)
LOC110491126 LOC106602822 coding downstream 128857 50717580 ~ 50884089 (+)
LOC110491193 LOC106560681 coding downstream 371408 50960131 ~ 50972173 (+)
sat2b sat2 coding downstream 394235 50982958 ~ 51008552 (+)
LOC110491259 LOC106560678 coding downstream 478768 51067491 ~ 51087131 (+)
G154594 NA non-coding upstream 840 50587274 ~ 50587589 (+)
G154593 NA non-coding upstream 2240 50585533 ~ 50586189 (+)
G154584 NA non-coding upstream 19674 50568324 ~ 50568755 (+)
G154583 NA non-coding upstream 20444 50567677 ~ 50567985 (+)
G154582 NA non-coding upstream 21310 50566823 ~ 50567119 (+)
G154591 NA non-coding downstream 10995 50599718 ~ 50600151 (+)
G154662 NA non-coding downstream 144182 50732905 ~ 50733216 (+)
G154663 NA non-coding downstream 144766 50733489 ~ 50783570 (+)
G154664 NA non-coding downstream 144900 50733623 ~ 50735681 (+)
G154669 NA non-coding downstream 168248 50756971 ~ 50778278 (+)
LOC110491026 LOC106560691 other upstream 487955 50098387 ~ 50100624 (+)
G152167 NA other upstream 2030743 48556782 ~ 48557686 (+)
G150997 NA other upstream 3040850 47497948 ~ 47547579 (+)
uevld uevld other upstream 3603203 46981686 ~ 47007672 (+)
G148191 NA other upstream 5096050 45472082 ~ 45492379 (+)
G154859 NA other downstream 576692 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 733073 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 823543 51412121 ~ 51417154 (+)
G155541 NA other downstream 832124 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 1227787 51816510 ~ 51824182 (+)

Expression


Co-expression Network