G154775


Basic Information

Item Value
gene id G154775
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51039872 ~ 51042833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU177059
ACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTTCACAGGTGGAAGGTAAGAGCGTACAACAGCAACAGAACAAGGTTTAAACGGCATATCCAACAATGCCTCCTTTTCCGATGCACTCTCCAATGTAGAACCACATCAGCACTTCAGTGCAGACCAATCCATTTCTGAATGCATCCTGTAACAAAAGCATATTGACATTAATCCCAAACAAATACCAGAGTCATATCTAAAAACCAACATGGCAGACAATTCCATATTTCCCAATTGGTTAGGATGTAGGCCTAATGTCTGGTGGATTGCAGCTACTTATTTTGATAATGAcgggactaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctagctaacaatttcaaaactactaccttatagacacaagtgtaaggggataaagaatatgtacataaagatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtattgagtgcagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaagatgcagt
>TU177063
ACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTTCACAGGTGGAAGGTAAGAGCGTACAACAGCAACAGAACAAGGTTTAAACGGCATATCCAACAATGCCTCCTTTTCCGATGCACTCTCCAATGTAGAACCACATCAGCACTTCAGTGCAGACCAATCCATTTCTGAATGCATCCTGTAACAAAAGCATATTGACATTAATCCCAAACAAATACCAGAGTCATATCTAAAAACCAACATGGCAGACAATTCCATATTTCCCAATTGGTTAGGATGTAGGCCTAATGTCTGGTGGATTGCAGCTACTTATTTTGATAATGAcgggactaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctagctaacaatttcaaaactactaccttatagacacaagtgtaaggggataaagaatatgtacataaagatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtattgagtgcagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaagatgcagt
>TU177068
gcgatcaccgtatgttgtcgaatttcatcccgctaccgggttcggtgcgcagagaggttaaacaaTGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTTCACAGGTGGAAGGTAAGAGCGTACAACAGCAACAGAACAAGGTTTAAACGGCATATCCAACAATGCCTCCTTTTCCGATGCACTCTCCAATGTAGAACCACATCAGCACTTCAGTGCAGACCAATCCATTTCTGAATGCATCCTGTAACAAAAGCATATTGACATTAATCCCAAACAAATACCAGAGTCATATCTAAAAACCAACATGGCAGACAATTCCATATTTCCCAATTGGTTAGGATGTAGGCCTAATGTCTGGTGGATTGCAGCTACTTATTTTGATAATGAcgggactaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctagctaacaatttcaaaactactaccttatagacacaagtgtaaggggataaagaatatgtacataaagatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtattgagtgcagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaagatgcagt
>TU177069
gcgatcaccgtatgttgtcgaatttcatcccgctaccgggttcggtgcgcagagaggttaaacaaTGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTCCACAGGTGGAAGGTAAGAGTACAACAGTTCTTTAAACAATGGACATTTATTAACTGATCTTCACAGGTGGAAGGTAAGAGCGTACAACAGCAACAGAACAAGGTTTAAACGGCATATCCAACAATGCCTCCTTTTCCGATGCACTCTCCAATGTAGAACCACATCAGCACTTCAGTGCAGACCAATCCATTTCTGAATGCATCCTGTAACAAAAGCATATTGACATTAATCCCAAACAAATACCAGAGTCATATCTAAAAACCAACATGGCAGACAATTCCATATTTCCCAATTGGTTAGGATGTAGGCCTAATGTCTGGTGGATTGCAGCTACTTATTTTGATAATGAcgggactaaatcaaatcaaattttatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctagctaacaatttcaaaactactaccttatagacacaagtgtaaggggataaagaatatgtacataaagatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtattgagtgcagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaagatgcagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177059 False 722 lncRNA 0.57 2 51039872 51042833
TU177063 False 844 lncRNA 0.47 3 51039872 51042833
TU177068 False 893 lncRNA 0.51 2 51041880 51042833
TU177069 True 893 lncRNA 0.40 2 51041880 51042833

Neighbor

gene id symbol gene type direction distance location
sat2b sat2 coding upstream 31320 50982958 ~ 51008552 (+)
LOC110491193 LOC106560681 coding upstream 67699 50960131 ~ 50972173 (+)
LOC110491126 LOC106602822 coding upstream 155783 50717580 ~ 50884089 (+)
LOC110491108 NA coding upstream 350725 50678814 ~ 50689147 (+)
zgc:56585 pgdh coding upstream 459656 50575416 ~ 50580216 (+)
LOC110491259 LOC106560678 coding downstream 24658 51067491 ~ 51087131 (+)
LOC118944166 NA coding downstream 51890 51094723 ~ 51094847 (+)
LOC110491269 LOC106560677 coding downstream 71374 51114207 ~ 51136900 (+)
LOC110491287 LOC106602850 coding downstream 190872 51233705 ~ 51236559 (+)
LOC110491302 LOC106560674 coding downstream 204908 51247741 ~ 51294746 (+)
G154796 NA non-coding upstream 20882 51018640 ~ 51018990 (+)
G154776 NA non-coding upstream 54937 50984134 ~ 50984935 (+)
G154740 NA non-coding upstream 60580 50977573 ~ 50979292 (+)
G154715 NA non-coding upstream 165256 50874086 ~ 50874616 (+)
G154702 NA non-coding upstream 186782 50844726 ~ 50853090 (+)
G154789 NA non-coding downstream 2809 51045642 ~ 51062055 (+)
G154823 NA non-coding downstream 46934 51089767 ~ 51090123 (+)
G154825 NA non-coding downstream 47656 51090489 ~ 51090717 (+)
G154829 NA non-coding downstream 55388 51098221 ~ 51098441 (+)
G154836 NA non-coding downstream 65967 51108800 ~ 51109074 (+)
LOC110491026 LOC106560691 other upstream 939398 50098387 ~ 50100624 (+)
G152167 NA other upstream 2482186 48556782 ~ 48557686 (+)
G150997 NA other upstream 3492293 47497948 ~ 47547579 (+)
uevld uevld other upstream 4054646 46981686 ~ 47007672 (+)
G148191 NA other upstream 5547493 45472082 ~ 45492379 (+)
G154859 NA other downstream 122582 51165415 ~ 51167174 (+)
LOC110501653 LOC106560673 other downstream 278963 51317121 ~ 51339537 (+)
rl28 rl28 other downstream 369433 51412121 ~ 51417154 (+)
G155541 NA other downstream 378014 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 773677 51816510 ~ 51824182 (+)

Expression


Co-expression Network