G154817


Basic Information

Item Value
gene id G154817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51145536 ~ 51147897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU177111
TCATACAATAGTGGCATACAAAAAGTGAGAGAGGGGTATGAGCATATATTACATATGCCTACCATTGCTAAGGCCGGCATCCTAAATACCCTTTCTACATTTAAATTTTTTTGATTTAATTTATTCTCCCCTGGAAAAACTAACCTCTAGCTGTGGCTACATTTCATCACCATGTCAACGTATTATCACCAAGTGGACATGTTGCCTACAGATGCCTGCCTCGTCAGCAAGCCAGGAAGATATTTCTCATCAAATGCGATGAGTATTATGGCTCGGATAGATTTTAGCCTGGTCAAGGCAGAGGATAACGAGAACAGGGtggtggacaaagtcatggaagcAACAAAGTGAGGTAGTTTGTGCAAGGTGATCAGATTGAATGGTGCGTGCGTCTAACCAGCTATATTATATGCAGAGAACGTGGCGTGAGTGAAGCAAGGTTTTAGATATGATGGGTTGTCGTAAACTATGGAGCTAGACAGGATTATCTAGGTTTATGCTTTGGCGCCATCTAAGGGGCTGAATGTTAAGTGGGTGGACCAGTTATCGCTCTCCTTCCAAAACGTGGTTACATTTACATAAACGTCAAGTATTACTAACTACACAGTATATTTATACTTTATTTAGTTTATAAACTTATCCTGTGTTTGCCCCCATTTTTGATAAATCCCCAATCATAGTAATATTTCCTCCATCATATCCCTCCCACGATACCTTCCCCCATTTCTCCTCCCCCATGCACCTGAAACCCCCCCACAAAGTAAGGCAGTAGGCTTGTATTTGGGTGATGATCTGTGAGTCGATATAATTTTATTTGTTTAGGGATTGGTCAAAAACTGTAAACAACTTGTCAAGTCATGTGCTCCGGTTCGTGTATACACTATAACAAGCTCATGCAGATTTGTAATATGCTGAAAAGTGGCCAAACTAAGTTGATATTTCTGGGCAATGGGCGCAGCCATCTTTGACTTTGTTTATTTGTGTCTTATGCCGCGTTCCAAACAACTTGAAATCGGAAAAATACAAGGTAAAATCATGAAATCAGTTATGTTCACgtcggaaagtcagagctctagaaagaggccccgAGTTGTAATTCCAAGTTGGACGAcctttcaaaatatatttttccatGTCGGGGCTCATtattttcagagttcccagtggTTTTCAATACACTGAAGTCGGAATTTGGAGATTTACAATTTCCCAGTTATTTTGAATGCGGCATTATAGTGAATTCGCAATCTGTGATTATGGAGTTTTCgcaaacataaacaaacatggcTGCCATCATAAAGAATTTTGCTGCTGTTAGCTTAGCtgacacacattttttttctaaACAACATTACATTAGTCTTTTGTGCTCACCAGAGATGTGATACATTGTAAACTAGTCTAGGATGCTAACTtatgtttagtttttttgtcaGCGCAACCTGTTATTTAGACTGGTTTATAGAATGAGTTTGGCTGTGGATGTGTTCCGTGTGATGCTTGGATGATGTTCTCATTTATCTTTAATGGAAAAATTGAGGAACAAAGTTTAAGACCTTAATTTTCCATCAGTACAAAAATATTTAGATGCTGTTCAGACAACAATGCTGTTTAGACGCGTTTGTTGTGTCATACGTTCTGTTGCTACAGTTCCATACGCCGCAGGGACCACTCAACAATGATCACAAATACCTCAATGTATGTTGTGTCAAAGGGTTAACTATGAAAACATTACGAAAACAATACAACAATAACATAAATACACTCCTCTTAACTTTGTGTTTCTTATTATGTGCTTTACAACTCATTCACCTTGGAAATCAATGAGTTTATATCTGGTTGCTCTTAGTACAGCCACTGCTGGCTTGTCACTCATTCGACTGACAACATAGCGTGAGAACTACAGCAGCGAGAGCTCGTGAACTGAAGCAACCACTAGAGCGAATGGCCGTCTCTGTTGGCCGaaaaccaccacaaccacactaaTGCAAGTAAATTATTAGCTAGAGATGACAAAGTTGACCATATATCTCACATATGAGACAAATTAAACAAAACTTACAGAATTCAATTAAATTCCGCTCACAAAATCTTGTGACATTTTTTGGTTCCTTCCACAGTGACTCTGGAAACAGTATTACAGATAACTGACAACGTACCGGAAGCAGTGAACTACAGAGTCACACTGTAAAAAAAATCCCAAAGTACCGCCACAACGTGTATCTTACTGCTTACATTGCAGCAGCAGTGAATTCCTTCCTCCGCTACTCTTTCGTCCGCATGAGGCTACAATAGGTTGAGTTTCCAGGGGCAGCTGTGAAATGGAATTGG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU177111 True 2331 lncRNA 0.51 2 51145536 51147897

Neighbor

gene id symbol gene type direction distance location
LOC110491269 LOC106560677 coding upstream 8636 51114207 ~ 51136900 (+)
LOC118944166 NA coding upstream 50689 51094723 ~ 51094847 (+)
LOC110491259 LOC106560678 coding upstream 58405 51067491 ~ 51087131 (+)
sat2b sat2 coding upstream 136984 50982958 ~ 51008552 (+)
LOC110491193 LOC106560681 coding upstream 173363 50960131 ~ 50972173 (+)
LOC110491287 LOC106602850 coding downstream 85808 51233705 ~ 51236559 (+)
LOC110491302 LOC106560674 coding downstream 99844 51247741 ~ 51294746 (+)
LOC110501653 LOC106560673 coding downstream 169224 51317121 ~ 51339537 (+)
LOC110491314 LOC106560671 coding downstream 227427 51375324 ~ 51405615 (+)
rl28 rl28 coding downstream 264224 51412121 ~ 51417154 (+)
G154837 NA non-coding upstream 33761 51111535 ~ 51111775 (+)
G154836 NA non-coding upstream 36462 51108800 ~ 51109074 (+)
G154829 NA non-coding upstream 47095 51098221 ~ 51098441 (+)
G154825 NA non-coding upstream 54819 51090489 ~ 51090717 (+)
G154823 NA non-coding upstream 55413 51089767 ~ 51090123 (+)
G154901 NA non-coding downstream 146905 51294802 ~ 51299854 (+)
G155515 NA non-coding downstream 202729 51350626 ~ 51355466 (+)
G155489 NA non-coding downstream 240080 51387977 ~ 51400214 (+)
G155491 NA non-coding downstream 262440 51410337 ~ 51410863 (+)
G155492 NA non-coding downstream 282969 51430866 ~ 51501997 (+)
LOC110491026 LOC106560691 other upstream 1045062 50098387 ~ 50100624 (+)
G152167 NA other upstream 2587850 48556782 ~ 48557686 (+)
G150997 NA other upstream 3597957 47497948 ~ 47547579 (+)
uevld uevld other upstream 4160310 46981686 ~ 47007672 (+)
G148191 NA other upstream 5653157 45472082 ~ 45492379 (+)
G154859 NA other downstream 17518 51165415 ~ 51167174 (+)
G155541 NA other downstream 272950 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 668613 51816510 ~ 51824182 (+)

Expression


Co-expression Network