G154901


Basic Information

Item Value
gene id G154901
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51294802 ~ 51299854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU177208
aaaacaagtctatatacaatgtgtgcaaatgaggtgagataggggaggtaaggcaacaaataggccatggtggcgaagtaaatacaatatagcaattaaacactggaatggtagatgtgtagaagattaatgtgcaaagtagaaatactagggtgcaaaggagcaagataggctatgggctatgtacaggtgcagtgatctgtgagctgctctgacagtttgtgcttaaagttagtgagggagatatgagtctccagtttcagtgatttttgtagtttgttccagtcattggcagcagagaactggaaggagaggtggccaaaggaggagttggctttgggagtgatcagtgagatatacctgctggagcacgtactactatggtgaccagtgagctgagataagacggggctttacctagcagggtctagtagatgacctgaagccagtgtAGAGGACAGGTCGAAGTGGTGGGTagtacatggggctttggtgacaaaatggatggcgctgtgatggactgcatccaatttgttgagtagagtgttggaggctattttgtaaattacatcgctgaagtcgaggatcggtaggatggtcagtgttACGAGGGTACcttttggcagcatgagtaaaggatgctttgttgcgaaataggaagccaattctagatttcattttgaattggagatattttatgtgagtctggacggagagtttacagtctaaccagacacctaggtatttgtagttgttcagatattctaagtcagaacagtccagagtagtgatgctggacggggggggcaggtgcgggcagcgatcggttgaagtgCATGCATGTAGTTTTaattgtatttaagagcagttggaggccacggacggagagttgtatggcattgaagttgGTCTGGAgggtagttaacacagtgtccaaagaagagccagaagtatacagaatggtgtcatctgtgtagaggtggatcagagactcaccagcagcaagagcgacatcattgttgtaaacagagaaaagagtcggcccaagaattgaaccctgtggcaccctcatagagactgccagaggcccggacaacaggccctccgatatgAACACTGGTGTCGTCTGaacactgaactctatcggagaagtaggtggtgaaccaggcgaggcaatcatttgagaaaccaaggctgttgagtctgccgataagaatgtggtgattgacagagtcgaaagccttagccaggtagATGaaaacagctgcacagtattgtttcttatcaatggcggttatgaaattgtttaggaccttgagcgtggctggggtgcacccatgaccaactctgaaaccagattgcatagcggagaaggtacggtgggattcaaaatggtcagtaatctgtttgttaacttggctttcgaagaccttagaaaggcagggtaggatagatataggtctgtagcagtttgggtcaagagtgccaccccctttgaagagggggatgaccgcagctccTCCCAATCTTTGGGAAcgtcagacgacacgaaagagaggttgaacaggctggtaaaaggggttgcaacaattttggcagatcattttagaagggaaggttccagattgtctagcccggctgatttgtagtggtccagattttgcagctctttcagatcatcagctatctggatttgggagtAGGagaatggggaggcttgggcgagttgctgtggggggtgcagggctgttgaccggagtaggggtagccaggtggaaagcatggccagccgtagaaaaatgcttgttgaaattatcaattatagtggatttatcggtggtgacagtgtttcctagcctcagtacagtgggaagttgggaggaggtgctcttattctccatggactttacagtgtcccagaaattCTTTGTATTTGTGTttcaggaagcaaatttctgcttgaaaaagctagccttggctttcctaactgcctctgtatattggttcctgactgaAAAATgccatatcacgggggctgtttgatgctaatgcagaacgccacatgATGTTttttgctggtcaagggcagtcaggtctggagagatcCAAGGgcaatatctgttcctggttctaaatctcTTGAGTGGGGTATGCTTTTTTAACCAGGtgtcctctactgatgggatgaggtcaatatccaggatacccgggccaggctgattagaaaggcctgcttgctgaagtgtttcagggagcgtttgacagtgatgaggagaggtcgtttgaccgcggatcCATTACGGATGctggcaatgaggcagtgatcgctgagatcttggttgaaaacagcagatttgtatttagagggcaagttgagGGTGCCcgtgagggtgcccatgtttacagctttggggttgtacctggtaggttcattgataatttgtgtgagattgagggcatcaagcttcgattgtaggatggccggggtgttaagtatGTCcccgtttaggtcacctagcagcacgagctctgaagatagatggggggcaatcagttcacatatggtgtccagagcacagctgggggcagagggaggtctatagcaagcggcaacggtgagagacttgtttctagaaaagtggatttttaaaagtagaagttcaaattgtttgggtacagacctggatagtaggacagaactctgcaggctatctctgcaatagattgcaacactgcccccttaggccgttctatcttgtctgaaaatctTGAAGTTAGGGAtagagatttcagggtttttggtggtcttcctaagccaggattcagacatggctaggacatccaggttggcagagtgtgctaaagcagtgaataaaacaaacttagggaggaggcttctaatgttaacatgcataaaACCAAGGCTTGTACGGTTACataagtcatcaaaagagagtgcCTGAGGAATAGGAGTTGAGCTAGGCACtccagggcctggattcacctctacatcgcctgaggaacagaggaggagtaggataagggtacggctaaaagctataagGGCTGGTCGTCTAGgacgtccggaacagagagtaaaaggagcatgtTTCTGGGGGCGATTAAATAGATTCAAggaataatgtacagacaaaggtatggtaggatgtgaatagagtggaggtaaacctaagcaatgagtgatgatgagagagatattgtctctagaaacatcattgaaacctgGTGATGTCATCgaatgtgtgggtggtggaactgaagggttggataaggtatattGAGCAGggttagaggctctacagtgaaataagacaataaacaCTAACCAATATTCAATTTGAGGATACTCTCCACCAAGCTGCTGTACACCATCTCCAGAACATCCTGGCTGACCCCAAACCGCTTCCATTTCCTGATTAAAAACAGGCGCTGGTTTGCCTTACAATATGTTtgattagtaatagagttatagtaaataAAACAGTCACATAACATCTtatttttacaaagtaaaacataAAAGTGCTGCTAAAGGGTGAAGATCCCTCAAATGTTAATAACTATCATCCTATCACCAAACTCCCTATCCTGGCCAAAGTCTATGAATCCATAGTGAACTCACAGTTTAAAAAAAGAACATACTGACTGGGGTTCAGTCTGGCTTTATAAATCGGGGCAcagcaccacaactgcagctataGCAGTGGAAAATTACATCATTAATGCACTTGATAAAAAGCAACATTGTGCTGCTTTGTTTGTGGATTTATTATTTGATTCAGTTGACCATAAATTGTTGCTAGCTAGACTCAGAAACATTGGTCTTAGTGAAGGGGCAGTAAATTGGTTAAGGAATTAtttttctgacagaacacaatgtgtatatactgacaatcacaaatGTAGCTTTCTTGAGATTAATATAGGCGTGCCCCAGGGTTCCATTTTAGCCCCAGTGTTGTTCTAAATTTGTATTAATGATTTGGGAAATGGGATGCAACCAGCAAAATTAcatctatatgcagatgatacagtcataTATACATGtgctccttctctggttcaggctTTTGAAAAGCTCCAGACTgcttttcagtcactgcaggcctCCCTTTATGGTCTCAAACTGGTCTTGAATGTACAAAAAACTAAATTCATGACCTTTAACAGTTAGAACTCAAAGAAGGTTAGCATTGTCATATCTGGTGGCTTATCCATTGAAAAAGTGTCCTCCTATAAATATCTAGGTATTTGGTTGGATGACAAGTTATCCTTTAAAGTTCATGTGGATAATCTTGTGACAAAGCTTAAATTGAAATTTAGTTTTTATTTTCGTAATAAGGCTTGCTTCCCGCTTATGGCTAGAAAGAAGCTTGTTCAGGCCactttttcactctgtcattgaTTATGGTGATTTGTTGTATatgcatgcagcctcctctgtcttacagagactggactctgtttatcactCATCAATCATATCACTcaagtcactcacccaccattACACCTTGTACCAAATGGTACAttggacctcactttatatgcGTAGAAAGATGcatttgtatgtgttcatctataaagccctttttggtaaactccctctttacctctgtagtctgctctccttcaccaccagcattTACCATACccagtctgctaggtggttgctactcaaagtccccaggacattcacagtattagACAAGACTGCCTCCTCTTCTTGTGCACCAGACACAtagaatagtctacaatccatgcttcatcgagatatgttagtgccactgaatgaatttaaaatattgatgggacactgttacagaggagtgtaaatgcttgttgtaggctggatcatgttgtattgtattgttgtatgttttaataacgtaatgtattgattgttgctgccttcttggccaggtctcccttgaaaaagagactctgTCTCAGTGggctttcctggttaaataaaggttaaataaagaaaagAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177208 True 5015 lncRNA 0.44 2 51294802 51299854

Neighbor

gene id symbol gene type direction distance location
LOC110491302 LOC106560674 coding upstream 56 51247741 ~ 51294746 (+)
LOC110491287 LOC106602850 coding upstream 58243 51233705 ~ 51236559 (+)
LOC110491269 LOC106560677 coding upstream 157902 51114207 ~ 51136900 (+)
LOC118944166 NA coding upstream 199955 51094723 ~ 51094847 (+)
LOC110491259 LOC106560678 coding upstream 207671 51067491 ~ 51087131 (+)
LOC110501653 LOC106560673 coding downstream 17267 51317121 ~ 51339537 (+)
LOC110491314 LOC106560671 coding downstream 75470 51375324 ~ 51405615 (+)
rl28 rl28 coding downstream 112267 51412121 ~ 51417154 (+)
LOC118944199 NA coding downstream 122002 51421856 ~ 51422029 (+)
LOC118944142 NA coding downstream 122483 51422337 ~ 51422453 (+)
G154817 NA non-coding upstream 146905 51145536 ~ 51147897 (+)
G154837 NA non-coding upstream 183027 51111535 ~ 51111775 (+)
G154836 NA non-coding upstream 185728 51108800 ~ 51109074 (+)
G154829 NA non-coding upstream 196361 51098221 ~ 51098441 (+)
G154825 NA non-coding upstream 204085 51090489 ~ 51090717 (+)
G155515 NA non-coding downstream 50772 51350626 ~ 51355466 (+)
G155489 NA non-coding downstream 88123 51387977 ~ 51400214 (+)
G155491 NA non-coding downstream 110483 51410337 ~ 51410863 (+)
G155492 NA non-coding downstream 131012 51430866 ~ 51501997 (+)
G155845 NA non-coding downstream 292988 51592842 ~ 51593164 (+)
G154859 NA other upstream 127628 51165415 ~ 51167174 (+)
LOC110491026 LOC106560691 other upstream 1194328 50098387 ~ 50100624 (+)
G152167 NA other upstream 2737116 48556782 ~ 48557686 (+)
G150997 NA other upstream 3747223 47497948 ~ 47547579 (+)
uevld uevld other upstream 4309576 46981686 ~ 47007672 (+)
G155541 NA other downstream 120993 51420847 ~ 51421122 (+)
G156000 LOC106560791 other downstream 516656 51816510 ~ 51824182 (+)
G158778 LOC106560766 other downstream 2721754 54021608 ~ 54021904 (+)

Expression


Co-expression Network