G155489


Basic Information

Item Value
gene id G155489
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51387977 ~ 51400214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU177850
tactttcgcaaggcactgtATGTGTCCATTACAGTCTATGCAAGAATTGGAATGCATGActtgtcaccagtacttgaaaatgtgaataaaaccgtaaatacattatgctccatgCATATGGTATGCTACACTAGAAACAACAAAttgatatacagaaaataagcaACTTCCTTTTTGATAGGAACACACacatttgtaaggaaaacaacaatgaagaCCATGCGGGCGCCAGCCATAAAATGTGCTGGGGGAAAACGTTTGCACGGCCTGTTCTGACTAGAGATGCGCAATGTCTTCATACATGATCTGGGGAAACACTAGGGAAGTGCTTTGGCTCTCATTGAAGAAAGAAGTTTGtccggctcagtaaagcctcaaacataaattgtccgcaacagtgaaatgcttctcaTGTGAATTAATGGggtggaacacacctcaattcaaactgttagaAAATAATTTTAAATTGACAAGTTGAACAGCCTAAAGATAATTAGCAGGCAATGTGCCTTGGTTTTTAGGGCAACGCGGTTTATAACtgtcctggcaccatccctacggtgaagctgggactgggagactcgtcaggatcgagggaaagatgagtaaagtacagagatccttgatgaaaacctgctccagagtgttcaggacctcagactggggcaaaggttcaccttccaacaggacagcgatcCTGAGCACATAGCCAATACACTGcatgagtggctttgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccgattgaacatctctggagagacctgaaaatagctgtgcagcgacgctccccaccaacctgacagagcttgagaggacttgcagagaagaatgggagaaattccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagactctaggctgtaatcgctgccaaaggtgcttcaacaaagtactgagttaaaaggtctgaatacttatgtaaatgttatgttttatttaatagttttttttgctgacatttctaaacctgtttttgctttgtcattaaggcgtattgtgtcctggggggggggggcaatgtaatcaattttacaataaggctgtagcgtaacaaaatgtggaaaaagtgaagtcgtccgaatactttccgaatgcactgtttctatttcattttcaatgaatATGGAAAAATGTctaaatgttttcactttgtcattacggggtattgtgtgtagataggtgaaCAAAAATTATTAGATATATAACTAAAATATGTacgcaacatggaacaatttcaaagattttaccaagttacagttcatataaagaagtCACTCAattgaaatacactgctcaaaaacatatttattctttacatagttgaatgtgctgacaacaaaatcacacaaattatcaatggaaatcaaatttatcaacccatggaggtctgtatTTGGAGTCAcgctcaaaattaaagtggaaaaccacac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177850 True 1517 lncRNA 0.40 2 51387977 51400214

Neighbor

gene id symbol gene type direction distance location
LOC110501653 LOC106560673 coding upstream 48440 51317121 ~ 51339537 (+)
LOC110491302 LOC106560674 coding upstream 93231 51247741 ~ 51294746 (+)
LOC110491287 LOC106602850 coding upstream 151418 51233705 ~ 51236559 (+)
LOC110491269 LOC106560677 coding upstream 251077 51114207 ~ 51136900 (+)
LOC118944166 NA coding upstream 293130 51094723 ~ 51094847 (+)
rl28 rl28 coding downstream 11907 51412121 ~ 51417154 (+)
LOC118944199 NA coding downstream 21642 51421856 ~ 51422029 (+)
LOC118944142 NA coding downstream 22123 51422337 ~ 51422453 (+)
LOC118944140 NA coding downstream 29240 51429454 ~ 51429572 (+)
cspg4 cspg4 coding downstream 1502977 52903191 ~ 53018812 (+)
G155515 NA non-coding upstream 32511 51350626 ~ 51355466 (+)
G154901 NA non-coding upstream 88123 51294802 ~ 51299854 (+)
G154817 NA non-coding upstream 240080 51145536 ~ 51147897 (+)
G154837 NA non-coding upstream 276202 51111535 ~ 51111775 (+)
G154836 NA non-coding upstream 278903 51108800 ~ 51109074 (+)
G155491 NA non-coding downstream 10123 51410337 ~ 51410863 (+)
G155492 NA non-coding downstream 30652 51430866 ~ 51501997 (+)
G155845 NA non-coding downstream 192628 51592842 ~ 51593164 (+)
G155940 LOC106613263 non-coding downstream 327307 51727521 ~ 51835110 (+)
G156000 LOC106560791 non-coding downstream 416296 51816510 ~ 51824182 (+)
G154859 NA other upstream 220803 51165415 ~ 51167174 (+)
LOC110491026 LOC106560691 other upstream 1287503 50098387 ~ 50100624 (+)
G152167 NA other upstream 2830291 48556782 ~ 48557686 (+)
G150997 NA other upstream 3840398 47497948 ~ 47547579 (+)
G155541 NA other downstream 20633 51420847 ~ 51421122 (+)
G158778 LOC106560766 other downstream 2621394 54021608 ~ 54021904 (+)
G159415 NA other downstream 2952769 54352983 ~ 54353388 (+)

Expression


Co-expression Network