G155940 (LOC106613263)


Basic Information

Item Value
gene id G155940
gene name LOC106613263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51727521 ~ 51835110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU178329
aaccggtcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactgtcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacaggacgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggccctcataccaccctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178329 True 225 lncRNA 0.44 3 51727521 51835110

Neighbor

gene id symbol gene type direction distance location
LOC118944140 NA coding upstream 297949 51429454 ~ 51429572 (+)
LOC118944142 NA coding upstream 305068 51422337 ~ 51422453 (+)
LOC118944199 NA coding upstream 305492 51421856 ~ 51422029 (+)
rl28 rl28 coding upstream 310367 51412121 ~ 51417154 (+)
LOC110491314 LOC106560671 coding upstream 321906 51375324 ~ 51405615 (+)
cspg4 cspg4 coding downstream 1068081 52903191 ~ 53018812 (+)
snupn snupn coding downstream 1298387 53133497 ~ 53167781 (+)
ptpn9a ptpn9 coding downstream 1369971 53205081 ~ 53249227 (+)
sin3aa sin3a coding downstream 1417698 53252808 ~ 53285424 (+)
wdr61 wdr61 coding downstream 1515990 53351100 ~ 53370380 (+)
G155845 NA non-coding upstream 134357 51592842 ~ 51593164 (+)
G155492 NA non-coding upstream 225524 51430866 ~ 51501997 (+)
G155491 NA non-coding upstream 316658 51410337 ~ 51410863 (+)
G155489 NA non-coding upstream 327307 51387977 ~ 51400214 (+)
G155515 NA non-coding upstream 372055 51350626 ~ 51355466 (+)
G156027 NA non-coding downstream 30362 51865472 ~ 51889131 (+)
G156038 NA non-coding downstream 48375 51883485 ~ 51896834 (+)
G156050 NA non-coding downstream 71061 51906171 ~ 51906450 (+)
G156060 NA non-coding downstream 84270 51919380 ~ 51919580 (+)
G156062 NA non-coding downstream 86261 51921371 ~ 51921572 (+)
G155541 NA other upstream 306399 51420847 ~ 51421122 (+)
LOC110501653 LOC106560673 other upstream 405088 51317121 ~ 51339537 (+)
G154859 NA other upstream 560347 51165415 ~ 51167174 (+)
LOC110491026 LOC106560691 other upstream 1627047 50098387 ~ 50100624 (+)
G158778 LOC106560766 other downstream 2186498 54021608 ~ 54021904 (+)
G159415 NA other downstream 2517873 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 2893186 54728296 ~ 54728860 (+)
G160569 NA other downstream 4111033 55946143 ~ 55947245 (+)
G161687 NA other downstream 4409934 56245044 ~ 56252598 (+)

Expression


Co-expression Network