G156400


Basic Information

Item Value
gene id G156400
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 51816655 ~ 51820176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU178814
GCcgaaagttttgagaattacagaaatattattttccacaaagtttgctgcttcattgtctttatggaatactgaagtatagtTACAagtatttcataagtgtcaaagccttttattgacaattgcatgaagttgatgcagagtcaatatttgcagtgttgacccttctttttcaagtcctctgcaatctgccctggcatgctgtcaattaacttctgggccacatcctgactgatgacagcccattcttgcataatcaatgcttggagtttgtcagaatttgtggggttttctttgtcctcgtcaacactcacacctgtgttaacgagagaatccctgacatgatgtcagctggtccttttgtggcagggctgagatgcagtggaaatgttttttggggattcagttcatttgcatggcaaagagggactttgcaattcatctgatcactcttcataacattctggagtatatgcaaattgccatcatacaagcTGAGGCagtagactttgtgaaaattaatatttgtgtcattctcaaaacttttggctacGACTgtacactttacattaagttgttTTTATACCTGTGGAGCGCAATGTAATTCCTCTAGTAAACACATTGTTTTTAGTGGAGTAACAATGTTACATAATTATTTAGTAATTGCATTGTAATGGTATAGTATTTGAGTTACTGTTTCTTAGTCTACTCTTTATTGTGTCATAACAAACAATGCACAATTCCATTACTATGCATTTACAAAGCAAAGACAACTTTTTACAATTActataacatgttactgatgtTGTTAGTAGAGTAATTGAAGCATTACTACAAATGTAAAATAGCAACTTAATTTAAACTGTTACCAAGGGAGTTTCAAATACGTAATTTTGTTGGCATAGTTTTATTGTATATAAGGTTTGCTGAGTCATTGCTCTATAGCGGTTTTTGGTTCGAACATGATTCTTCTCAAAACCCCTCtaaatgtattaattaatttATCAAGATTAGATCTCATTATCTCTGTTTTCTTGTGCTAGACACTGTGGCACACAATGTTTATTGGCCATAAACATTGCATTATTTTATCATATTTCATAAAATATAATGATAATATAGAGTgcattcacaccccttaactttctcctcattttgttgtgacagcctgaatataaaatggtcactgatctacacataataccacataatgtcaaatAGAAATTATTTCAAATTGAAAAAGGTATTCAATCccttttatggcaagcctaaataagttcatgagtaaacatttgcttaataaATTGCAtgcactcactctgtgtgcaataatagtggttaacatgatttgtTAATAACTatcccatctctgtaccccacacatacaattgtctgtaaggtcccttagtcgagcagtgaatttcaagcacagatttaaccacaaagaccagggaagttttccaatgcctgaCAAAGGAACGGAACCGATTGGTAAATATAAtgaagcagacactgaatatccgtttgagcatggtgaagctgTTTgttaggctttggatggtgtatgaaTACACCCAAGTACTACAAAGATTCAGACTTCCTTCCGAACTGAGTTGCCGGAGAGAaagaaaaccgctcagggatttcaccatgaggccatggTGATTATAAAACagtaacagagtttaatggctgtgatatgacAAACCTGAGGATGGCTCAAAAACATTGTGGTTACTtcaaaatactaacctaaatgacagagtgaaaagaacgatgcctgtacagaataaaacaatattccaaaacatgcatcctgtttgcaacaactgcaaaatactgcaaaaaatgtggcatagGAATTCCATTTTTGTCCTGAATCACTGGGTACCATTCTCAATATTTTCAATCGTGGGGTGGCTGCATCATaatatgggtatgcttgtcgtCAGAAAGGACTGAAAAGTTTTTCcaggataaaaagaaaaggaatgtagctaagcacaggcacaatcctagaggaaaacctggttctgtcTGCTTTCTAACATACACTTAGAAACTAGttaacctttcagcagaacaataaacctaaaacacaaaaccaAATCTAtacgagttgcttaccaagatgtcattgaatgttcctgagtggcgtacttagagttttgacttaaatctgcctcaaaatctatggcaagacttgacaaatctgtctagcaatgatcaacaaccaacttgacagagcttgaagaattttcaaaataatatttgcaAATATTCCAcaatccaggtatgcaaagctcttagacctactaatacatcttgattagataagtattggttttttttaattttcattagtaaattgtatttattttttgtgtagattgatggggggaaaAAATTTAAAAGccaattaaatccatttaaaccctactttgtaacacaacaaaatgtcgaAAAAGTCTAGGGgcgtaaatactttctgaaggcacagtaattttattatattatctatttatttttgtttttctctGGGGAGCTAAAATCAGCCTAATCGATGTGGTGTTTTTAAACAGTCTATACGCAAACAATGAACAATGACACAAATAACAGAAAtgacacattatacacacacacacacttctctctgtTCAGAAGATAATCCAGCAAAAAAATGTTTGGATGCTACTGTTGATTACACTCTATATGACAACAACTGCTGGTATATTCCATTGCATATTATTGCATGAATACCTTGGTATCTGTTTATCTGCTGCCTTTTGAATTATGTTACAGTGCACTCTAAAGAGTCTTACATAATGGGCTTATGTTGTGCTTAACATTTTTATGGAGAATAAAAGTTGGGATGCTCTACTTTGTTACTAATGTGCTCAGCAACCTGTAAAACACTTAATCCCATGTTAGGGAGCTTTGGTTGTCAGAAATATTATTGTTTGAATTTCTCGACCCTCCGCAACCACACCCCCATACAAAAATTCCTTTGCAGGTTTATTTTACTATATGATATCCCAAAAAAGGGTGTAAAGAATTTTAAAAAAGTAACTTCCTGCTGATCCTCctggatatacagtatgtgtaatgAATGCCCTTATCTTTTCAACTACACACTGTGGACAGCTGGGCTTTGCGGATATGTGCAGGATAAAGGCTATGTTATTGATGATGGATGACATTCCAGACAACGACACACAGTAACGGGTTGGAAGTATGGACTGAATATGCAGATGGTGCATCGACACAGATGGTTTCACCCATGGAGTGGTCTGAAGCAAGCAGCTTTGGAGTAATCCGTTTTGCTGAAAACCATGGTTCCCTCCCTGGCTGATTATGAATGCTCGCTTTGTTCAAAGTGTGGCAACTGTACTTAGTCTTTTGGTCCCGGTCGAGTCAGAGATTCATGGGAACCTCATTTCTTTCTCTTGttcctttttttattttgacccaGGACTATGTTGAACATGTAGTCCCAGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178814 True 3499 lncRNA 0.41 2 51816655 51820176

Neighbor

gene id symbol gene type direction distance location
LOC110491276 LOC106560676 coding downstream 587326 51180770 ~ 51229329 (-)
LOC110491241 LOC106560679 coding downstream 766458 51039870 ~ 51050197 (-)
LOC110491226 NA coding downstream 831670 50984132 ~ 50984985 (-)
LOC110491182 LOC106602821 coding downstream 862380 50906636 ~ 50954275 (-)
rbm41 rbm41 coding downstream 1137842 50665296 ~ 50678813 (-)
lingo1a LOC106560791 coding upstream 2115 51822291 ~ 52089547 (-)
LOC118937283 NA coding upstream 959420 52779596 ~ 52780459 (-)
snx33 snx33 coding upstream 1253117 53032902 ~ 53112547 (-)
LOC118940482 NA coding upstream 1362422 53182598 ~ 53188868 (-)
crabp1a crabp1 coding upstream 1491845 53312021 ~ 53343562 (-)
G155847 NA non-coding downstream 221895 51594361 ~ 51594760 (-)
G155702 NA non-coding downstream 314532 51458298 ~ 51502123 (-)
G155673 NA non-coding downstream 391522 51424551 ~ 51425133 (-)
G155610 NA non-coding downstream 402279 51412269 ~ 51417110 (-)
G155668 NA non-coding downstream 405770 51410640 ~ 51410885 (-)
G156452 NA non-coding upstream 76698 51896874 ~ 51897074 (-)
G156454 NA non-coding upstream 78769 51898945 ~ 51899187 (-)
G156523 NA non-coding upstream 167928 51988104 ~ 51988403 (-)
G156524 NA non-coding upstream 168310 51988486 ~ 52023144 (-)
G156553 NA non-coding upstream 203038 52023214 ~ 52023487 (-)
G155281 LOC106560681 other downstream 844720 50971076 ~ 50971935 (-)
G155072 NA other downstream 1235306 50579798 ~ 50581349 (-)
G155003 NA other downstream 1364508 50415743 ~ 50452147 (-)
G159120 NA other upstream 2036510 53856686 ~ 53857552 (-)
cd59 cd59-2 other upstream 2149267 53969443 ~ 53971367 (-)
ambra1b LOC106560763 other upstream 2437250 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 2908123 54728299 ~ 54728860 (-)

Expression


Co-expression Network