G157220


Basic Information

Item Value
gene id G157220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 52554829 ~ 52555062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU179654
cccataaacatcacaattgggtctttttcccgattaaatccgtcattgtatacccaaaatgtcatttgctgaaggccagtctgatgctgcaaaaagcccatttacaagacgcaacatcactttttaaaattacaaaagtcgcctataaacttttacaaatcacttcaaacgacttttctaaaccaactttaggtattaataaacgttaatgatgtatcaaattgatcacggggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179654 True 234 lncRNA 0.47 1 52554829 52555062

Neighbor

gene id symbol gene type direction distance location
LOC118944140 NA coding upstream 1125257 51429454 ~ 51429572 (+)
LOC118944142 NA coding upstream 1132376 51422337 ~ 51422453 (+)
LOC118944199 NA coding upstream 1132800 51421856 ~ 51422029 (+)
rl28 rl28 coding upstream 1137675 51412121 ~ 51417154 (+)
LOC110491314 LOC106560671 coding upstream 1149214 51375324 ~ 51405615 (+)
cspg4 cspg4 coding downstream 348129 52903191 ~ 53018812 (+)
snupn snupn coding downstream 578435 53133497 ~ 53167781 (+)
ptpn9a ptpn9 coding downstream 650019 53205081 ~ 53249227 (+)
sin3aa sin3a coding downstream 697746 53252808 ~ 53285424 (+)
wdr61 wdr61 coding downstream 796038 53351100 ~ 53370380 (+)
G157165 NA non-coding upstream 16818 52533750 ~ 52538011 (+)
G157143 NA non-coding upstream 28680 52497506 ~ 52526149 (+)
G157139 NA non-coding upstream 58933 52495695 ~ 52495896 (+)
G157111 NA non-coding upstream 74621 52480003 ~ 52480208 (+)
G157099 NA non-coding upstream 86463 52468160 ~ 52468366 (+)
G157297 NA non-coding downstream 47063 52602125 ~ 52602332 (+)
G157347 NA non-coding downstream 78205 52633267 ~ 52633530 (+)
G157354 NA non-coding downstream 85473 52640535 ~ 52640734 (+)
G157357 NA non-coding downstream 86032 52641094 ~ 52641316 (+)
G157370 NA non-coding downstream 94115 52649177 ~ 52649422 (+)
G156000 LOC106560791 other upstream 730647 51816510 ~ 51824182 (+)
G155541 NA other upstream 1133707 51420847 ~ 51421122 (+)
LOC110501653 LOC106560673 other upstream 1232396 51317121 ~ 51339537 (+)
G154859 NA other upstream 1387655 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 1466546 54021608 ~ 54021904 (+)
G159415 NA other downstream 1797921 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 2173234 54728296 ~ 54728860 (+)
G160569 NA other downstream 3391081 55946143 ~ 55947245 (+)
G161687 NA other downstream 3689982 56245044 ~ 56252598 (+)

Expression


Co-expression Network