Gene
RNA
| Item | Value |
|---|---|
| gene id | G157898 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 52997999 ~ 52998667 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| chondroitin sulfate proteoglycan 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU180348 | True | 669 | lncRNA | 0.40 | 1 | 52997999 | 52998667 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937283 | NA | coding | downstream | 217540 | 52779596 ~ 52780459 (-) |
| lingo1a | LOC106560791 | coding | downstream | 908452 | 51822291 ~ 52089547 (-) |
| LOC110491276 | LOC106560676 | coding | downstream | 1768670 | 51180770 ~ 51229329 (-) |
| LOC110491241 | LOC106560679 | coding | downstream | 1947802 | 51039870 ~ 51050197 (-) |
| LOC110491226 | NA | coding | downstream | 2013014 | 50984132 ~ 50984985 (-) |
| snx33 | snx33 | coding | upstream | 74626 | 53032902 ~ 53112547 (-) |
| LOC118940482 | NA | coding | upstream | 183931 | 53182598 ~ 53188868 (-) |
| crabp1a | crabp1 | coding | upstream | 313354 | 53312021 ~ 53343562 (-) |
| slc25a44a | LOC106560784 | coding | upstream | 374565 | 53373232 ~ 53396108 (-) |
| oaz2a | LOC106560783 | coding | upstream | 469605 | 53468272 ~ 53490405 (-) |
| G157911 | NA | non-coding | downstream | 1773 | 52995944 ~ 52996226 (-) |
| G157816 | NA | non-coding | downstream | 94161 | 52853690 ~ 52903838 (-) |
| G157796 | NA | non-coding | downstream | 170475 | 52820795 ~ 52827524 (-) |
| G157744 | NA | non-coding | downstream | 212395 | 52742469 ~ 52785604 (-) |
| G157497 | NA | non-coding | downstream | 257571 | 52740199 ~ 52740428 (-) |
| G157979 | NA | non-coding | upstream | 117592 | 53116259 ~ 53116495 (-) |
| G158048 | snupn | non-coding | upstream | 160671 | 53159338 ~ 53165236 (-) |
| G158057 | NA | non-coding | upstream | 172305 | 53170972 ~ 53171240 (-) |
| G158241 | NA | non-coding | upstream | 176739 | 53175406 ~ 53264124 (-) |
| G158306 | ptpn9 | non-coding | upstream | 247066 | 53245733 ~ 53246513 (-) |
| G155610 | NA | other | downstream | 1580889 | 51412269 ~ 51417110 (-) |
| G155281 | LOC106560681 | other | downstream | 2026064 | 50971076 ~ 50971935 (-) |
| G155072 | NA | other | downstream | 2416650 | 50579798 ~ 50581349 (-) |
| G155003 | NA | other | downstream | 2545852 | 50415743 ~ 50452147 (-) |
| G159120 | NA | other | upstream | 858019 | 53856686 ~ 53857552 (-) |
| cd59 | cd59-2 | other | upstream | 970776 | 53969443 ~ 53971367 (-) |
| ambra1b | LOC106560763 | other | upstream | 1258759 | 54213602 ~ 54268394 (-) |
| G159890 | LOC106562215 | other | upstream | 1729632 | 54728299 ~ 54728860 (-) |
