G157986


Basic Information

Item Value
gene id G157986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53121169 ~ 53129021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU180440
ttttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaaaacggactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatacttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacatttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgtttccactcccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacgacgagttgagtttttaccaaaaagttatactttggtttcatctgaccatatgacattctcccaatgctctctagcaaacttcagacgggcctggacatggcttaagcagggggacacgtctggcactgcatgatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtcccccgtgtggttctgggatttttgctcaccattcttgtgataattttgaccccatggggtgagatcttgcgtggagccccagatcaagggagattatcagtggtcttgtatgtcttccatttcctaacaattgctcccacagttgatttctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacagatgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgaaaataaattcattaaaaatcctacaatgtgattttctggattttttattctcgttttgtctgtcatagttgaagtgtacctatgatgaaaattacagatcaaatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagcaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcaaataataataatcacaggcagaacagttgaaactggagcagcagcacagccaggtggactggggacagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180440 True 1530 lncRNA 0.45 2 53121169 53129021

Neighbor

gene id symbol gene type direction distance location
cspg4 cspg4 coding upstream 102357 52903191 ~ 53018812 (+)
LOC118944140 NA coding upstream 1691597 51429454 ~ 51429572 (+)
LOC118944142 NA coding upstream 1698716 51422337 ~ 51422453 (+)
LOC118944199 NA coding upstream 1699140 51421856 ~ 51422029 (+)
rl28 rl28 coding upstream 1704015 51412121 ~ 51417154 (+)
snupn snupn coding downstream 4476 53133497 ~ 53167781 (+)
ptpn9a ptpn9 coding downstream 76060 53205081 ~ 53249227 (+)
sin3aa sin3a coding downstream 123787 53252808 ~ 53285424 (+)
wdr61 wdr61 coding downstream 222079 53351100 ~ 53370380 (+)
ireb2 ireb2 coding downstream 287092 53416113 ~ 53438769 (+)
G157726 NA non-coding upstream 28072 53092833 ~ 53093097 (+)
G157500 NA non-coding upstream 335584 52742500 ~ 52785585 (+)
G157499 NA non-coding upstream 379409 52741544 ~ 52741760 (+)
G157495 NA non-coding upstream 381747 52739081 ~ 52739422 (+)
G157492 NA non-coding upstream 384987 52735925 ~ 52736182 (+)
G158109 crabp1 non-coding downstream 183003 53312024 ~ 53343526 (+)
G158167 NA non-coding downstream 261229 53390250 ~ 53391247 (+)
G158182 NA non-coding downstream 283499 53412520 ~ 53412744 (+)
psma4 psma4 non-coding downstream 315023 53444044 ~ 53466316 (+)
G158212 NA non-coding downstream 367836 53496857 ~ 53497265 (+)
G156000 LOC106560791 other upstream 1296987 51816510 ~ 51824182 (+)
G155541 NA other upstream 1700047 51420847 ~ 51421122 (+)
LOC110501653 LOC106560673 other upstream 1798736 51317121 ~ 51339537 (+)
G154859 NA other upstream 1953995 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 892587 54021608 ~ 54021904 (+)
G159415 NA other downstream 1223962 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 1599275 54728296 ~ 54728860 (+)
G160569 NA other downstream 2817122 55946143 ~ 55947245 (+)
G161687 NA other downstream 3116023 56245044 ~ 56252598 (+)

Expression


Co-expression Network