Gene
RNA
| Item | Value |
|---|---|
| gene id | G158048 |
| gene name | snupn |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 53159338 ~ 53165236 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| snupn | Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1). |
| description |
|---|
| snurportin-1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU180505 | True | 234 | lncRNA | 0.54 | 2 | 53159338 | 53165236 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| snx33 | snx33 | coding | downstream | 46791 | 53032902 ~ 53112547 (-) |
| LOC118937283 | NA | coding | downstream | 378879 | 52779596 ~ 52780459 (-) |
| lingo1a | LOC106560791 | coding | downstream | 1069791 | 51822291 ~ 52089547 (-) |
| LOC110491276 | LOC106560676 | coding | downstream | 1930009 | 51180770 ~ 51229329 (-) |
| LOC110491241 | LOC106560679 | coding | downstream | 2109141 | 51039870 ~ 51050197 (-) |
| LOC118940482 | NA | coding | upstream | 17362 | 53182598 ~ 53188868 (-) |
| crabp1a | crabp1 | coding | upstream | 146785 | 53312021 ~ 53343562 (-) |
| slc25a44a | LOC106560784 | coding | upstream | 207996 | 53373232 ~ 53396108 (-) |
| oaz2a | LOC106560783 | coding | upstream | 303036 | 53468272 ~ 53490405 (-) |
| sv2 | LOC106560774 | coding | upstream | 658536 | 53823772 ~ 53851668 (-) |
| G157979 | NA | non-coding | downstream | 42843 | 53116259 ~ 53116495 (-) |
| G157898 | NA | non-coding | downstream | 160671 | 52997999 ~ 52998667 (-) |
| G157911 | NA | non-coding | downstream | 163112 | 52995944 ~ 52996226 (-) |
| G157816 | NA | non-coding | downstream | 255500 | 52853690 ~ 52903838 (-) |
| G157796 | NA | non-coding | downstream | 331814 | 52820795 ~ 52827524 (-) |
| G158057 | NA | non-coding | upstream | 5736 | 53170972 ~ 53171240 (-) |
| G158241 | NA | non-coding | upstream | 10170 | 53175406 ~ 53264124 (-) |
| G158306 | ptpn9 | non-coding | upstream | 80497 | 53245733 ~ 53246513 (-) |
| G158308 | NA | non-coding | upstream | 87621 | 53252857 ~ 53269371 (-) |
| G158393 | NA | non-coding | upstream | 231426 | 53396662 ~ 53396931 (-) |
| G155610 | NA | other | downstream | 1742228 | 51412269 ~ 51417110 (-) |
| G155281 | LOC106560681 | other | downstream | 2187403 | 50971076 ~ 50971935 (-) |
| G155072 | NA | other | downstream | 2577989 | 50579798 ~ 50581349 (-) |
| G159120 | NA | other | upstream | 691450 | 53856686 ~ 53857552 (-) |
| cd59 | cd59-2 | other | upstream | 804207 | 53969443 ~ 53971367 (-) |
| ambra1b | LOC106560763 | other | upstream | 1092190 | 54213602 ~ 54268394 (-) |
| G159890 | LOC106562215 | other | upstream | 1563063 | 54728299 ~ 54728860 (-) |
| LOC110491905 | ppip5k1 | other | upstream | 2770435 | 55935649 ~ 56006747 (-) |
