Gene
RNA
| Item | Value |
|---|---|
| gene id | G158308 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 53252857 ~ 53269371 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: paired amphipathic helix protein Sin3a isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU180801 | True | 233 | lncRNA | 0.59 | 2 | 53252857 | 53269371 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118940482 | NA | coding | downstream | 63989 | 53182598 ~ 53188868 (-) |
| snx33 | snx33 | coding | downstream | 140310 | 53032902 ~ 53112547 (-) |
| LOC118937283 | NA | coding | downstream | 472398 | 52779596 ~ 52780459 (-) |
| lingo1a | LOC106560791 | coding | downstream | 1163310 | 51822291 ~ 52089547 (-) |
| LOC110491276 | LOC106560676 | coding | downstream | 2023528 | 51180770 ~ 51229329 (-) |
| crabp1a | crabp1 | coding | upstream | 42650 | 53312021 ~ 53343562 (-) |
| slc25a44a | LOC106560784 | coding | upstream | 103861 | 53373232 ~ 53396108 (-) |
| oaz2a | LOC106560783 | coding | upstream | 198901 | 53468272 ~ 53490405 (-) |
| sv2 | LOC106560774 | coding | upstream | 554401 | 53823772 ~ 53851668 (-) |
| LOC110491563 | LOC106603697 | coding | upstream | 573295 | 53842666 ~ 53845012 (-) |
| G158306 | ptpn9 | non-coding | downstream | 6344 | 53245733 ~ 53246513 (-) |
| G158057 | NA | non-coding | downstream | 81617 | 53170972 ~ 53171240 (-) |
| G158048 | snupn | non-coding | downstream | 87621 | 53159338 ~ 53165236 (-) |
| G157979 | NA | non-coding | downstream | 136362 | 53116259 ~ 53116495 (-) |
| G157898 | NA | non-coding | downstream | 254190 | 52997999 ~ 52998667 (-) |
| G158393 | NA | non-coding | upstream | 127291 | 53396662 ~ 53396931 (-) |
| G158291 | NA | non-coding | upstream | 169544 | 53438915 ~ 53439271 (-) |
| G158400 | NA | non-coding | upstream | 174670 | 53444041 ~ 53445912 (-) |
| G158430 | NA | non-coding | upstream | 178288 | 53447659 ~ 53447864 (-) |
| G158431 | NA | non-coding | upstream | 179243 | 53448614 ~ 53448813 (-) |
| G155610 | NA | other | downstream | 1835747 | 51412269 ~ 51417110 (-) |
| LOC110491241 | LOC106560679 | other | downstream | 2202977 | 51039870 ~ 51050197 (-) |
| G155281 | LOC106560681 | other | downstream | 2280922 | 50971076 ~ 50971935 (-) |
| G155072 | NA | other | downstream | 2671508 | 50579798 ~ 50581349 (-) |
| G159120 | NA | other | upstream | 587315 | 53856686 ~ 53857552 (-) |
| cd59 | cd59-2 | other | upstream | 700072 | 53969443 ~ 53971367 (-) |
| ambra1b | LOC106560763 | other | upstream | 988055 | 54213602 ~ 54268394 (-) |
| G159890 | LOC106562215 | other | upstream | 1458928 | 54728299 ~ 54728860 (-) |
| LOC110491905 | ppip5k1 | other | upstream | 2666300 | 55935649 ~ 56006747 (-) |
