G158400


Basic Information

Item Value
gene id G158400
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53444041 ~ 53445912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU180899
CTATCACTTGTGCATCAGTGCGCTCTGAAGAGTTAAGAATGATATGCAGTCTTACATTGCACCCAAACAGGACAGATCTGAGATTTGTTTTGCTACTTAGTCCTCTTAAATTGTAATTCCAAATTGCACATCAAtaatatttatggttatatgacCAAAGActtgtataactaacccaagatagaccagatCCTGTtgtgtcgtttccaatgggagtaAATTCATcttagtgggcagaacaagcaagatGTGCAGAGCCAAGCACCAGCTAGTGAGATTCTATTGGTGTGTTCAAGCATTTATTCGCCTACTCTTTGAAGTGCATGTGTGCTCAATTTGTCATTGCTCTACACAACACAGTCCACTCTGTTTGTAACAGATTCTAGTtatggaaacagaaaactgtatggagatcaaatgttttatctATGAGAAAAAAACTCAATTTTCTCCCACTGCCAACCATGGggacttcctctcatcaccagatttggtagtgagtggaaactcCAACTGGATGCTTCACGTGTATGGGCCCTACATCCAGTGAAATATCCGTCTCGTTGTTCTATCTGCGATATGACAGTCTGCTCTTCCATTCCTCAACCTTCACACCAGGGCTGCCAAAAATATAAGGTCGCTAATAAGACTTTTGACCTGGCCTCTCAGCTGCCACGGCTATTCCTTATACATCTTGTTGAGTCCATCCCaggaaaagccagactacaaAAACTTGTTGGATACTTATTTCGACGTATTTTCTGTAGCCTACCGGAGGACAGATGCACGCTTTCTCTTGATTTCTGAATAAAATGAGCTACAGCATTAAGGCCTTCACACCGACAGTGTTCTTGCGTTTTGGTACatcagaagtacattcatttccaatggaatgctgcgtttgccttgcagtgCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU180899 True 917 lncRNA 0.41 2 53444041 53445912

Neighbor

gene id symbol gene type direction distance location
slc25a44a LOC106560784 coding downstream 47933 53373232 ~ 53396108 (-)
crabp1a crabp1 coding downstream 100479 53312021 ~ 53343562 (-)
LOC118940482 NA coding downstream 255173 53182598 ~ 53188868 (-)
snx33 snx33 coding downstream 331494 53032902 ~ 53112547 (-)
LOC118937283 NA coding downstream 663582 52779596 ~ 52780459 (-)
oaz2a LOC106560783 coding upstream 22360 53468272 ~ 53490405 (-)
sv2 LOC106560774 coding upstream 377860 53823772 ~ 53851668 (-)
LOC110491563 LOC106603697 coding upstream 396754 53842666 ~ 53845012 (-)
ppib ppib coding upstream 444997 53890909 ~ 53893848 (-)
adpgk adpgk coding upstream 485417 53930055 ~ 53942241 (-)
G158291 NA non-coding downstream 4770 53438915 ~ 53439271 (-)
G158393 NA non-coding downstream 47110 53396662 ~ 53396931 (-)
G158308 NA non-coding downstream 174670 53252857 ~ 53269371 (-)
G158241 NA non-coding downstream 179917 53175406 ~ 53264124 (-)
G158306 ptpn9 non-coding downstream 197528 53245733 ~ 53246513 (-)
G158430 NA non-coding upstream 1747 53447659 ~ 53447864 (-)
G158431 NA non-coding upstream 2702 53448614 ~ 53448813 (-)
G158474 NA non-coding upstream 82473 53528385 ~ 53528639 (-)
G158475 NA non-coding upstream 82791 53528703 ~ 53529029 (-)
G158480 NA non-coding upstream 86040 53531952 ~ 53532199 (-)
G155610 NA other downstream 2026931 51412269 ~ 51417110 (-)
LOC110491241 LOC106560679 other downstream 2394161 51039870 ~ 51050197 (-)
G155281 LOC106560681 other downstream 2472106 50971076 ~ 50971935 (-)
G155072 NA other downstream 2862692 50579798 ~ 50581349 (-)
G159120 NA other upstream 410774 53856686 ~ 53857552 (-)
cd59 cd59-2 other upstream 523531 53969443 ~ 53971367 (-)
ambra1b LOC106560763 other upstream 811514 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 1282387 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 2489759 55935649 ~ 56006747 (-)

Expression


Co-expression Network