G158583


Basic Information

Item Value
gene id G158583
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53682932 ~ 53685702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181088
aaaaggagtaggcaagagaatggtcatggacaggcaaaaggtcaaaaccagatcagagtccacgaggtacagagtggcaggcaggcttgaggtcaaggcaggcagaatggtcaggcaggcgggtacagagtccagaaacaggcaaaggtcaaaactgggaggactagaaaaaggagaaataGCAAAGGCAGGAGTacaggaaaaccgctggttgacttggacataaaagacaaactggcacagagagacaggaaacacagggattaaTACACTGGGGAcgacaagcgacacctggagggggtggagacaataatgaggacaggAGAGCTGATTGGTGTCGACTGGCTGCTCAGGTAGACAGGAAAGGCCATACAGGACAATGACTCTGACTCGGAGGAGACTGATTTTGAAGGCTATGCATTGGAACCCACAGTTGGTAGTCCTCTGGATGACTTCATCACCACCACAGCTGACTTCTCTGCTGCCAGCCCCACCCAGACTGCTCCCAATGCCACCAGTACCGGGCCTGCTTCACGCACATCCCAGTCTGCCGCCAGCCAACTTGATTGgtttgatacagttgaagtcggaagttttcatacacttaggttggggcattataacttgtttttcaatcactccacaaatttcttgttaacaaactatagatttggcaagtcggtgaggacatctactttgtgcataacacaagtcatttttacaacaattgtttacagacagattatttcacttacagtataattcactctatcacaattccagtgggtcagaagtttacatactgtaagttgactgtgcctttaaacagcttgaaaaattccagaaaatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctcccttctaactcagtgcctctttgcttgacattatggttaaatcaaaagaaatcagccaaggcctcagaaaaataattgtaaacctccacaagtctggttcatagaactgtttggccatgatgaccatcgttatgtttggaggcaaaaggggatgcttgcaagctgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtgtacttcacaaaatagatggcatcatgagggaggaaaattgtgtggatatattgaagcaacatcaagacatcagtcaggaagttaaaacgtggtcacaaatgggtcttccaaatggacaatgaccccaagcatacttccaaatatagtggtgatcctaactgacctaagacaggaactatttactacgattaaatgtcaggaattgtgaaacactgagtttatatgtttttattttaatacattctaggctgcatgatgcgaatctaacgatgatttgaaaaaagttgcataaaaggcatgagctctgctttgttatttgtgcaggctgtacacacttaatcagtctctcattcacaatttgacaagcacttgataatgtctTGAATTTCCCGgcagcatcccctttgtgtggccgtaatgccccctaaaaaaagCCATGCCTTTTACCGCCagtggccattgtgcccttgggctaaatataataattataattcccttctccctgcGTGCTACTTGCtgtgaagcacctctcactcacatggctctctgtcACATGtccgggtctttctcacaggctgaAAGTGAAGACAGACACGTCCGGGATGCAACtgctgtcgtggaaatttcctctatcaccaaatcatgggagcaaaccacaacacaagtcagagttagttatcaaagtccatctttaattatatcagctctatcacaatcctgtgactctcaggcaattcagtgtctaaccatgaattctctgagagccccctccacatttcaaatgaggtcctttatagcaaagacacacacaggataagacagcatcggcataattcattgttcagctttgtctccttactcaaactcagaaccataaaccaaccctccatatcaacaggcatatataaaattgtcatttagatacaaccaactctaaatacaaccaatcctatcttgacaagatcacagagacacactgactggcacacagacattgtggagccaagagatatgtttacacatgatgatactttgacctctcccctctctgcggtccatgcaacttagtcttgacatagaacagatactgcaaaccctgccacagtattatacaaaaataacattcttgatgagaagtaatttacacacatttgatgaacatcttacatatgttaccaacaaattctgattcTTCCACGACATTCCCCTCTCAAGGGACTCAGTCCCTTCTGAAGAATCAGAATAGTGACATACTCAATATTTTAAAATTCAAATCCCCTCAATGTCTAATACCTTAGCTTATATGTAAGCTTTCTCCCTTCTGAAACTAAGTTTACAACCTTTATTCTACAAGACAAACTTGCACATgtttaataacacagaataatccatttgaggaaaataaaaacataac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181088 True 2592 lncRNA 0.43 2 53682932 53685702

Neighbor

gene id symbol gene type direction distance location
rbpms2a LOC106560779 coding upstream 31078 53637305 ~ 53651854 (+)
psma4 psma4 coding upstream 216616 53444044 ~ 53466316 (+)
ireb2 ireb2 coding upstream 244163 53416113 ~ 53438769 (+)
wdr61 wdr61 coding upstream 312552 53351100 ~ 53370380 (+)
sin3aa sin3a coding upstream 397508 53252808 ~ 53285424 (+)
LOC110491473 ap3b2 coding downstream 14116 53699818 ~ 53797088 (+)
cpeb1a LOC106560740 coding downstream 111524 53797226 ~ 53823634 (+)
snx1a LOC106560773 coding downstream 167126 53852828 ~ 53868273 (+)
snx22 LOC106560771 coding downstream 181814 53867516 ~ 53890738 (+)
LOC110491599 NA coding downstream 208432 53894134 ~ 53898191 (+)
G158584 NA non-coding upstream 73 53682642 ~ 53682859 (+)
G158607 NA non-coding upstream 5666 53676969 ~ 53677266 (+)
G158514 NA non-coding upstream 128309 53554358 ~ 53554623 (+)
G158496 NA non-coding upstream 136837 53545871 ~ 53546095 (+)
G158495 NA non-coding upstream 137159 53545571 ~ 53545773 (+)
G158612 NA non-coding downstream 74 53685776 ~ 53685981 (+)
G158613 NA non-coding downstream 336 53686038 ~ 53686811 (+)
G158616 NA non-coding downstream 2978 53688680 ~ 53688980 (+)
G158617 NA non-coding downstream 3472 53689174 ~ 53689596 (+)
G158618 NA non-coding downstream 4500 53690202 ~ 53690403 (+)
G156000 LOC106560791 other upstream 1858750 51816510 ~ 51824182 (+)
G155541 NA other upstream 2261810 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2265814 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2360499 51317121 ~ 51339537 (+)
G154859 NA other upstream 2515758 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 335906 54021608 ~ 54021904 (+)
G159415 NA other downstream 667281 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 1042594 54728296 ~ 54728860 (+)
G160569 NA other downstream 2260441 55946143 ~ 55947245 (+)
G161687 NA other downstream 2559342 56245044 ~ 56252598 (+)

Expression


Co-expression Network