G158732


Basic Information

Item Value
gene id G158732
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53888904 ~ 53889239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181245
atgttggaacattgcggggacttacttccattcagccacaagcattagggAGGTTGgtcactgatgttgagcgattaggcctggctcgcagcaggcgttccaattcaccccaaaggtgttcaatgcggttgaggtcagggctctgtacaggccagtcaagttctatcacaccaatctcaacaaaccagtTCTttttggacctcgctttgtgcaccggggcattgtcatgctgaaacaggaaagagccttccccaaactgctgctacaaagttggaagcacagaatcatctagaatatcaTGTGCTGTAGCGTTAAACTTTACCTTCACTGTAACTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181245 True 336 lncRNA 0.48 1 53888904 53889239

Neighbor

gene id symbol gene type direction distance location
snx1a LOC106560773 coding upstream 20631 53852828 ~ 53868273 (+)
cpeb1a LOC106560740 coding upstream 65270 53797226 ~ 53823634 (+)
LOC110491473 ap3b2 coding upstream 91816 53699818 ~ 53797088 (+)
rbpms2a LOC106560779 coding upstream 237050 53637305 ~ 53651854 (+)
psma4 psma4 coding upstream 422588 53444044 ~ 53466316 (+)
LOC110491599 NA coding downstream 4895 53894134 ~ 53898191 (+)
bbs4 LOC106560769 coding downstream 16695 53905934 ~ 53926823 (+)
kcnj11l irk11 coding downstream 52614 53941853 ~ 53969163 (+)
dgkzb LOC106560764 coding downstream 211528 54100767 ~ 54191587 (+)
itga11b itga11 coding downstream 475679 54364918 ~ 54455954 (+)
G158731 NA non-coding upstream 62 53888544 ~ 53888842 (+)
G158707 NA non-coding upstream 63181 53825402 ~ 53825723 (+)
G158706 NA non-coding upstream 64128 53824537 ~ 53824776 (+)
G158618 NA non-coding upstream 198501 53690202 ~ 53690403 (+)
G158617 NA non-coding upstream 199308 53689174 ~ 53689596 (+)
G158742 NA non-coding downstream 25735 53914974 ~ 54010809 (+)
G158696 cd59-2 non-coding downstream 80215 53969454 ~ 53970875 (+)
G158776 NA non-coding downstream 126516 54015755 ~ 54016247 (+)
G158781 NA non-coding downstream 138419 54027658 ~ 54028060 (+)
G158783 LOC106560766 non-coding downstream 140385 54029624 ~ 54029860 (+)
G156000 LOC106560791 other upstream 2064722 51816510 ~ 51824182 (+)
G155541 NA other upstream 2467782 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2471786 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2566471 51317121 ~ 51339537 (+)
G154859 NA other upstream 2721730 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 132369 54021608 ~ 54021904 (+)
G159415 NA other downstream 463744 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 839057 54728296 ~ 54728860 (+)
G160569 NA other downstream 2056904 55946143 ~ 55947245 (+)
G161687 NA other downstream 2355805 56245044 ~ 56252598 (+)

Expression


Co-expression Network