G158742


Basic Information

Item Value
gene id G158742
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53914974 ~ 54010809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181260
ggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcaggtgaatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcaccgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatatttcagtttttgatttgttaaaaaagtttgaaagcGTGCAaaagtgtcccacttgttgttgattcttcacaaaaaaatacagttttat

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181260 True 361 lncRNA 0.42 2 53914974 54010809

Neighbor

gene id symbol gene type direction distance location
LOC110491599 NA coding upstream 16783 53894134 ~ 53898191 (+)
snx22 LOC106560771 coding upstream 24236 53867516 ~ 53890738 (+)
snx1a LOC106560773 coding upstream 46701 53852828 ~ 53868273 (+)
cpeb1a LOC106560740 coding upstream 91340 53797226 ~ 53823634 (+)
LOC110491473 ap3b2 coding upstream 117886 53699818 ~ 53797088 (+)
dgkzb LOC106560764 coding downstream 89958 54100767 ~ 54191587 (+)
itga11b itga11 coding downstream 354109 54364918 ~ 54455954 (+)
cln6b cln6 coding downstream 463214 54474023 ~ 54486909 (+)
calml4b calml4 coding downstream 480916 54491725 ~ 54504596 (+)
spg11 spg11 coding downstream 842003 54852812 ~ 54944780 (+)
G158732 NA non-coding upstream 25735 53888904 ~ 53889239 (+)
G158731 NA non-coding upstream 26132 53888544 ~ 53888842 (+)
G158707 NA non-coding upstream 89251 53825402 ~ 53825723 (+)
G158706 NA non-coding upstream 90198 53824537 ~ 53824776 (+)
G158618 NA non-coding upstream 224571 53690202 ~ 53690403 (+)
G158776 NA non-coding downstream 4946 54015755 ~ 54016247 (+)
G158781 NA non-coding downstream 16849 54027658 ~ 54028060 (+)
G158783 LOC106560766 non-coding downstream 18815 54029624 ~ 54029860 (+)
G158785 NA non-coding downstream 21006 54031815 ~ 54032061 (+)
G158818 NA non-coding downstream 64155 54074964 ~ 54075183 (+)
G156000 LOC106560791 other upstream 2090792 51816510 ~ 51824182 (+)
G155541 NA other upstream 2493852 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2497856 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2592541 51317121 ~ 51339537 (+)
G154859 NA other upstream 2747800 51165415 ~ 51167174 (+)
G158778 LOC106560766 other downstream 10799 54021608 ~ 54021904 (+)
G159415 NA other downstream 342174 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 717487 54728296 ~ 54728860 (+)
G160569 NA other downstream 1935334 55946143 ~ 55947245 (+)
G161687 NA other downstream 2234235 56245044 ~ 56252598 (+)

Expression


Co-expression Network