G159157


Basic Information

Item Value
gene id G159157
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 53914985 ~ 53922960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181689
aatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtgagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagcttgagctcagtgaagttggatggagagcatttgtgaacagcagttttcagttctttccacagattcttcgTTGGATTCAGGACTGGACTtcgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttaatttgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttaaagggaaggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacgtctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181689 True 1307 lncRNA 0.42 2 53914985 53922960

Neighbor

gene id symbol gene type direction distance location
ppib ppib coding downstream 21137 53890909 ~ 53893848 (-)
sv2 LOC106560774 coding downstream 63317 53823772 ~ 53851668 (-)
LOC110491563 LOC106603697 coding downstream 69973 53842666 ~ 53845012 (-)
oaz2a LOC106560783 coding downstream 424580 53468272 ~ 53490405 (-)
slc25a44a LOC106560784 coding downstream 518877 53373232 ~ 53396108 (-)
adpgk adpgk coding upstream 8369 53930055 ~ 53942241 (-)
cd59 cd59-2 coding upstream 46490 53969443 ~ 53971367 (-)
prdm11 LOC106560765 coding upstream 54968 53977928 ~ 53995578 (-)
phf21ab LOC106560766 coding upstream 73134 53996094 ~ 54058156 (-)
chrm4b LOC106560739 coding upstream 286098 54209058 ~ 54210956 (-)
G159146 NA non-coding downstream 12085 53902694 ~ 53902900 (-)
G159145 NA non-coding downstream 13719 53900902 ~ 53901266 (-)
G159144 NA non-coding downstream 14510 53900276 ~ 53900475 (-)
G159138 NA non-coding downstream 25781 53888670 ~ 53889204 (-)
G159137 NA non-coding downstream 29073 53884138 ~ 53885912 (-)
G159196 NA non-coding upstream 110420 54033380 ~ 54033628 (-)
G159197 NA non-coding upstream 110752 54033712 ~ 54033918 (-)
G159201 NA non-coding upstream 135458 54058418 ~ 54058682 (-)
G159290 LOC106560764 non-coding upstream 262148 54185108 ~ 54186210 (-)
G159120 NA other downstream 57433 53856686 ~ 53857552 (-)
snx33 snx33 other downstream 802694 53032902 ~ 53112547 (-)
G155610 NA other downstream 2497875 51412269 ~ 51417110 (-)
LOC110491241 LOC106560679 other downstream 2865105 51039870 ~ 51050197 (-)
G155281 LOC106560681 other downstream 2943050 50971076 ~ 50971935 (-)
ambra1b LOC106560763 other upstream 334466 54213602 ~ 54268394 (-)
G159890 LOC106562215 other upstream 805339 54728299 ~ 54728860 (-)
LOC110491905 ppip5k1 other upstream 2012711 55935649 ~ 56006747 (-)
G161823 NA other upstream 2378395 56301355 ~ 56302095 (-)

Expression


Co-expression Network