G158783 (LOC106560766)


Basic Information

Item Value
gene id G158783
gene name LOC106560766
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54029624 ~ 54029860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181301
TTCGACACCAGTCGGACGGGCTCAAAACACTGATTGGTCAATTTGCTAGCCACCTGAAGGTTCACTGGTGTGTTCTGGGAGTTGACGACACTAGGCTTGGAGGCATGGCTGATGGCAGCAACCATGGCGACGGTGGCAGGGCGCTGCGCCACAACAGAGGAAGGCATGGTGGGAGTGGCAGCTTTCAGCACTACAGGTAGAGTCTTAGTGGAGATGACTGGGGTGACTGTCAGCGTc

Function

NR:

description
PHD finger protein 21A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181301 True 237 lncRNA 0.57 1 54029624 54029860

Neighbor

gene id symbol gene type direction distance location
kcnj11l irk11 coding upstream 60461 53941853 ~ 53969163 (+)
bbs4 LOC106560769 coding upstream 102801 53905934 ~ 53926823 (+)
LOC110491599 NA coding upstream 131433 53894134 ~ 53898191 (+)
snx22 LOC106560771 coding upstream 138886 53867516 ~ 53890738 (+)
snx1a LOC106560773 coding upstream 161351 53852828 ~ 53868273 (+)
dgkzb LOC106560764 coding downstream 70907 54100767 ~ 54191587 (+)
itga11b itga11 coding downstream 335058 54364918 ~ 54455954 (+)
cln6b cln6 coding downstream 444163 54474023 ~ 54486909 (+)
calml4b calml4 coding downstream 461865 54491725 ~ 54504596 (+)
spg11 spg11 coding downstream 822952 54852812 ~ 54944780 (+)
G158781 NA non-coding upstream 1564 54027658 ~ 54028060 (+)
G158776 NA non-coding upstream 13377 54015755 ~ 54016247 (+)
G158742 NA non-coding upstream 18815 53914974 ~ 54010809 (+)
G158696 cd59-2 non-coding upstream 58749 53969454 ~ 53970875 (+)
G158732 NA non-coding upstream 140385 53888904 ~ 53889239 (+)
G158785 NA non-coding downstream 1955 54031815 ~ 54032061 (+)
G158818 NA non-coding downstream 45104 54074964 ~ 54075183 (+)
G158829 NA non-coding downstream 56615 54086475 ~ 54086791 (+)
G158839 NA non-coding downstream 161982 54191842 ~ 54192170 (+)
G158841 NA non-coding downstream 162750 54192610 ~ 54192886 (+)
G158778 LOC106560766 other upstream 7720 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 2205442 51816510 ~ 51824182 (+)
G155541 NA other upstream 2608502 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2612506 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2707191 51317121 ~ 51339537 (+)
G159415 NA other downstream 323123 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 698436 54728296 ~ 54728860 (+)
G160569 NA other downstream 1916283 55946143 ~ 55947245 (+)
G161687 NA other downstream 2215184 56245044 ~ 56252598 (+)
G162130 NA other downstream 3018454 57048314 ~ 57053642 (+)

Expression


Co-expression Network