Gene
RNA
| Item | Value |
|---|---|
| gene id | G158829 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 54086475 ~ 54086791 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tc3 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU181347 | True | 317 | lncRNA | 0.55 | 1 | 54086475 | 54086791 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| kcnj11l | irk11 | coding | upstream | 117312 | 53941853 ~ 53969163 (+) |
| bbs4 | LOC106560769 | coding | upstream | 159652 | 53905934 ~ 53926823 (+) |
| LOC110491599 | NA | coding | upstream | 188284 | 53894134 ~ 53898191 (+) |
| snx22 | LOC106560771 | coding | upstream | 195737 | 53867516 ~ 53890738 (+) |
| snx1a | LOC106560773 | coding | upstream | 218202 | 53852828 ~ 53868273 (+) |
| dgkzb | LOC106560764 | coding | downstream | 13976 | 54100767 ~ 54191587 (+) |
| itga11b | itga11 | coding | downstream | 278127 | 54364918 ~ 54455954 (+) |
| cln6b | cln6 | coding | downstream | 387232 | 54474023 ~ 54486909 (+) |
| calml4b | calml4 | coding | downstream | 404934 | 54491725 ~ 54504596 (+) |
| spg11 | spg11 | coding | downstream | 766021 | 54852812 ~ 54944780 (+) |
| G158818 | NA | non-coding | upstream | 11292 | 54074964 ~ 54075183 (+) |
| G158785 | NA | non-coding | upstream | 54414 | 54031815 ~ 54032061 (+) |
| G158783 | LOC106560766 | non-coding | upstream | 56615 | 54029624 ~ 54029860 (+) |
| G158781 | NA | non-coding | upstream | 58415 | 54027658 ~ 54028060 (+) |
| G158776 | NA | non-coding | upstream | 70228 | 54015755 ~ 54016247 (+) |
| G158839 | NA | non-coding | downstream | 105051 | 54191842 ~ 54192170 (+) |
| G158841 | NA | non-coding | downstream | 105819 | 54192610 ~ 54192886 (+) |
| G158887 | NA | non-coding | downstream | 126821 | 54213612 ~ 54216497 (+) |
| G158939 | NA | non-coding | downstream | 203307 | 54290098 ~ 54290351 (+) |
| G158942 | NA | non-coding | downstream | 205183 | 54291974 ~ 54292241 (+) |
| G158778 | LOC106560766 | other | upstream | 64571 | 54021608 ~ 54021904 (+) |
| G156000 | LOC106560791 | other | upstream | 2262293 | 51816510 ~ 51824182 (+) |
| G155541 | NA | other | upstream | 2665353 | 51420847 ~ 51421122 (+) |
| rl28 | rl28 | other | upstream | 2669357 | 51412121 ~ 51417154 (+) |
| LOC110501653 | LOC106560673 | other | upstream | 2764042 | 51317121 ~ 51339537 (+) |
| G159415 | NA | other | downstream | 266192 | 54352983 ~ 54353388 (+) |
| G159889 | LOC106562215 | other | downstream | 641505 | 54728296 ~ 54728860 (+) |
| G160569 | NA | other | downstream | 1859352 | 55946143 ~ 55947245 (+) |
| G161687 | NA | other | downstream | 2158253 | 56245044 ~ 56252598 (+) |
| G162130 | NA | other | downstream | 2961523 | 57048314 ~ 57053642 (+) |
